gene08876-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene08876-v1.0-hybrid T008382_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.732 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.732 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.732 0.880
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.729 0.880
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.729 0.880
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.729 0.880
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.729 0.860
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.689 0.860
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.685 0.860
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.685 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna08876.1-v1.0-hybrid AP2 57 108

Links

Other AP2 family TFs
Other Fragaria vesca TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.790
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.758
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.757
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.757
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.747
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.746
Pm023417 Prunus mume Pm023417 I 0.746
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.742
TCM_015930 Theobroma cacao TCM_015930 I 0.741
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.739
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.739
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.739
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.739
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.738
Bo7g104770 Brassica oleracea Bo7g104770 I 0.733
Bo4g036220 Brassica oleracea Bo4g036220 I 0.732
Bra005314 Brassica rapa Bra005314 I 0.732
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.732
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.732
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.732
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.732
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.732
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.732
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.732
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.732
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.732
PK25970.1 Cannabis sativa PK25970.1 I 0.730
ERF038 Arabidopsis thaliana AT2G35700 D 0.729
ERF039 Arabidopsis thaliana AT4G16750 D 0.729
Bo1g053270 Brassica oleracea Bo1g053270 I 0.729
Bra012693 Brassica rapa Bra012693 I 0.729
Bra040092 Brassica rapa Bra040092 I 0.729
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.729
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.729
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.728
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.728
Ca_12765 Cicer arietinum Ca_12765 I 0.727
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.727
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.727
Bo3g028500 Brassica oleracea Bo3g028500 I 0.725
Bra023026 Brassica rapa Bra023026 I 0.725
Cla005715 Citrullus lanatus Cla005715 I 0.724
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.724
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.724
28353.m000054 Ricinus communis 28353.m000054 I 0.719
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.719
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.713
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.711
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.711
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.711
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.711
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.711
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.711
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.711
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.711
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.711
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.711
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.711
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.711
OS02G0656600 Oryza sativa OS02G0656600 I 0.711
OS04G0549700 Oryza sativa OS04G0549700 I 0.711
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.711
Si010703m.g Setaria italica Si010703m.g I 0.711
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.711
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.711
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.711
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.711
Cla012859 Citrullus lanatus Cla012859 I 0.703
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.703
MDP0000790788 Malus domestica MDP0000790788 I 0.703
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.701
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.701
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.700
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.699
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.699
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.696
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.694
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.694
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.694
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.693
Bo1g009990 Brassica oleracea Bo1g009990 I 0.692
Bra011383 Brassica rapa Bra011383 I 0.692
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.692
Cla021417 Citrullus lanatus Cla021417 I 0.692
Bo6g077080 Brassica oleracea Bo6g077080 I 0.690
Bra003415 Brassica rapa Bra003415 I 0.690
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.689
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.689
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.689
POPTR_0001s15550 Populus trichocarpa POPTR_0001s15550 I 0.688
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.688
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.687
POPTR_0003s04920 Populus trichocarpa POPTR_0003s04920 I 0.686
TINY Arabidopsis thaliana AT5G25810 D 0.685
Bo7g095710 Brassica oleracea Bo7g095710 I 0.685
Bo9g011210 Brassica oleracea Bo9g011210 I 0.685
Bra009862 Brassica rapa Bra009862 I 0.685
Bra036552 Brassica rapa Bra036552 I 0.685
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.685
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.685
MDP0000174352 Malus domestica MDP0000174352 I 0.685
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.685
Bo8g095240 Brassica oleracea Bo8g095240 I 0.684
Bra007539 Brassica rapa Bra007539 I 0.684
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.684
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.684
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.684
Bra037041 Brassica rapa Bra037041 I 0.682
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.682
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.682
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.682
Ca_01908 Cicer arietinum Ca_01908 I 0.682
Ca_28185 Cicer arietinum Ca_28185 I 0.682
Pm013463 Prunus mume Pm013463 I 0.682
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.682
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.682
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.682
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.682
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.682
OB11G16300 Oryza brachyantha OB11G16300 I 0.681
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.681
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.681
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.681
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.681
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.681
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.680
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.680
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.680
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.680
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.680
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.680
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.680
MDP0000652413 Malus domestica MDP0000652413 I 0.680
DREB3 Arabidopsis thaliana AT5G11590 I 0.679
Bo3g171090 Brassica oleracea Bo3g171090 I 0.679
Bo7g115860 Brassica oleracea Bo7g115860 I 0.679
Bo9g170060 Brassica oleracea Bo9g170060 I 0.679
Bra008952 Brassica rapa Bra008952 I 0.679
Bra034535 Brassica rapa Bra034535 I 0.679
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.679
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.679
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.679
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.679
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.679
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.679
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.679
TCM_037194 Theobroma cacao TCM_037194 I 0.679
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.679
Cla023465 Citrullus lanatus Cla023465 I 0.679
Pm005151 Prunus mume Pm005151 I 0.679
29794.m003381 Ricinus communis 29794.m003381 I 0.679
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.679
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.679
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.679
mgf022971m Mimulus guttatus mgf022971m I 0.679
mgf024816m Mimulus guttatus mgf024816m I 0.679
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.679
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.679
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.679
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.679
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.679
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.679
MDP0000241650 Malus domestica MDP0000241650 I 0.679
MDP0000242611 Malus domestica MDP0000242611 I 0.679
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.679
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.679
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.679
PK28082.1 Cannabis sativa PK28082.1 I 0.679
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.678
OBART04G20820 Oryza barthii OBART04G20820 I 0.678
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.678
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.678
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.678
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.678
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.678
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.678
OS04G0549800 Oryza sativa OS04G0549800 I 0.678
TCM_028851 Theobroma cacao TCM_028851 I 0.678
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.678
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.678