POPTR_0001s15550 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0001s15550 T004579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.724 0.824
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.724 0.824
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.724 0.824
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.724 0.824
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.724 0.824
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.724 0.824
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.724 0.804
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.698 0.824
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.698 0.824
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.689 0.824
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.689 0.824
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.681 0.804
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.681 0.824
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.677 0.804
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.677 0.804
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.677 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s15550.1 AP2 71 122

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.801
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.783
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.766
TCM_015930 Theobroma cacao TCM_015930 I 0.764
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.763
Bo3g028500 Brassica oleracea Bo3g028500 I 0.758
Bra023026 Brassica rapa Bra023026 I 0.758
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.758
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.758
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.758
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.758
PK25970.1 Cannabis sativa PK25970.1 I 0.758
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.758
SapurV1A.1087s0080 Salix purpurea SapurV1A.1087s0080 I 0.757
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.755
Pm023417 Prunus mume Pm023417 I 0.755
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.751
Ca_12765 Cicer arietinum Ca_12765 I 0.745
28353.m000054 Ricinus communis 28353.m000054 I 0.743
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.739
SapurV1A.1360s0120 Salix purpurea SapurV1A.1360s0120 I 0.737
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.736
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.734
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.734
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.733
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.733
Cla005715 Citrullus lanatus Cla005715 I 0.727
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.727
Bo7g104770 Brassica oleracea Bo7g104770 I 0.725
ERF038 Arabidopsis thaliana AT2G35700 D 0.724
ERF039 Arabidopsis thaliana AT4G16750 D 0.724
Bo1g053270 Brassica oleracea Bo1g053270 I 0.724
Bo4g036220 Brassica oleracea Bo4g036220 I 0.724
Bra005314 Brassica rapa Bra005314 I 0.724
Bra012693 Brassica rapa Bra012693 I 0.724
Bra040092 Brassica rapa Bra040092 I 0.724
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.724
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.724
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.724
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.724
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.724
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.724
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.724
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.724
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.724
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.721
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.714
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.714
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.714
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.713
Gorai.008G107700 Gossypium raimondii Gorai.008G107700 I 0.705
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.703
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.703
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.703
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.699
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.699
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.699
ERF035 Arabidopsis thaliana AT3G60490 D 0.698
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.698
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.697
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.697
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.696
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.696
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.694
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.694
30174.m008790 Ricinus communis 30174.m008790 I 0.692
TCM_005639 Theobroma cacao TCM_005639 I 0.691
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.690
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.690
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.690
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.690
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.690
ERF034 Arabidopsis thaliana AT2G44940 D 0.689
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.689
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.689
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.689
Pm017610 Prunus mume Pm017610 I 0.689
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.689
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.689
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.689
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.689
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.688
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.687
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.687
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.687
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.687
TCM_037194 Theobroma cacao TCM_037194 I 0.687
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.687
Pm005151 Prunus mume Pm005151 I 0.687
29794.m003381 Ricinus communis 29794.m003381 I 0.687
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.687
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.687
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.687
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.687
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.687
MDP0000241650 Malus domestica MDP0000241650 I 0.687
MDP0000242611 Malus domestica MDP0000242611 I 0.687
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.687
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.687
PK28082.1 Cannabis sativa PK28082.1 I 0.687
Bo3g037480 Brassica oleracea Bo3g037480 I 0.686
Bra000366 Brassica rapa Bra000366 I 0.686
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.686
Bra037041 Brassica rapa Bra037041 I 0.685
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.685
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.685
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.685
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.685
TCM_028851 Theobroma cacao TCM_028851 I 0.685
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.685
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.685
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.685
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.685
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.685
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.684
DREB3 Arabidopsis thaliana AT5G11590 I 0.684
Bo3g171090 Brassica oleracea Bo3g171090 I 0.684
Bo7g115860 Brassica oleracea Bo7g115860 I 0.684
Bo9g170060 Brassica oleracea Bo9g170060 I 0.684
Bra008952 Brassica rapa Bra008952 I 0.684
Bra034535 Brassica rapa Bra034535 I 0.684
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.684
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.684
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.684
TCM_014892 Theobroma cacao TCM_014892 I 0.684
mgf022971m Mimulus guttatus mgf022971m I 0.684
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.684
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.684
Ciclev10006536m.g Citrus clementina Ciclev10006536m.g I 0.684
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.684
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.684
orange1.1g041015m.g Citrus sinensis orange1.1g041015m.g I 0.684
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.684
Bo4g024220 Brassica oleracea Bo4g024220 I 0.683
Bo4g195280 Brassica oleracea Bo4g195280 I 0.683
Bra004878 Brassica rapa Bra004878 I 0.683
Bra040333 Brassica rapa Bra040333 I 0.683
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.683
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.681
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.681
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.681
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.681
Si039427m.g Setaria italica Si039427m.g I 0.681
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.681
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.681
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.681
30146.m003535 Ricinus communis 30146.m003535 I 0.680
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.679
Cla023465 Citrullus lanatus Cla023465 I 0.678
ERF043 Arabidopsis thaliana AT4G32800 D 0.677
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.677
TCM_044478 Theobroma cacao TCM_044478 I 0.677
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.677
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.677
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.677
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.677