Lus10004738.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10004738.g T008740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.745 0.900
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.745 0.880
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.745 0.880
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.745 0.880
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.745 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.745 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.745 0.880
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.702 0.860
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.696 0.860
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.696 0.860
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.691 0.820
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.691 0.820
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.680 0.820
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.680 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10004738 AP2 37 88

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.826
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.757
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.756
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.754
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.754
Bo3g028500 Brassica oleracea Bo3g028500 I 0.753
Bra023026 Brassica rapa Bra023026 I 0.753
PK25970.1 Cannabis sativa PK25970.1 I 0.752
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.747
Bo7g104770 Brassica oleracea Bo7g104770 I 0.746
ERF038 Arabidopsis thaliana AT2G35700 D 0.745
ERF039 Arabidopsis thaliana AT4G16750 D 0.745
Bo1g053270 Brassica oleracea Bo1g053270 I 0.745
Bo4g036220 Brassica oleracea Bo4g036220 I 0.745
Bra005314 Brassica rapa Bra005314 I 0.745
Bra012693 Brassica rapa Bra012693 I 0.745
Bra040092 Brassica rapa Bra040092 I 0.745
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.745
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.745
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.745
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.745
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.745
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.745
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.745
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.745
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.745
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.743
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.742
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.741
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.739
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.739
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.738
28353.m000054 Ricinus communis 28353.m000054 I 0.737
Ca_12765 Cicer arietinum Ca_12765 I 0.736
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.733
TCM_015930 Theobroma cacao TCM_015930 I 0.731
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.730
Bo6g077080 Brassica oleracea Bo6g077080 I 0.729
Bra003415 Brassica rapa Bra003415 I 0.729
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.726
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.726
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.726
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.726
Bo8g095240 Brassica oleracea Bo8g095240 I 0.724
Bra007539 Brassica rapa Bra007539 I 0.724
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.724
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.722
Pm023417 Prunus mume Pm023417 I 0.722
MDP0000790788 Malus domestica MDP0000790788 I 0.717
Cla005715 Citrullus lanatus Cla005715 I 0.716
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.716
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.714
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.714
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.714
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.714
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.713
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.713
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.713
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.713
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.713
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.713
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.713
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.713
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.713
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.713
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.713
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.713
OS02G0656600 Oryza sativa OS02G0656600 I 0.713
OS04G0549700 Oryza sativa OS04G0549700 I 0.713
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.713
Si010703m.g Setaria italica Si010703m.g I 0.713
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.713
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.713
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.713
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.713
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.711
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.707
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.706
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.706
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.706
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.705
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.705
OBART04G20820 Oryza barthii OBART04G20820 I 0.705
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.705
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.705
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.705
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.705
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.705
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.705
OS04G0549800 Oryza sativa OS04G0549800 I 0.705
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.703
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.703
Cla021417 Citrullus lanatus Cla021417 I 0.703
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.703
Q3HS42_BRANA Brassica napus Q3HS42_BRANA D 0.702
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.700
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.700
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.700
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.700
ERF035 Arabidopsis thaliana AT3G60490 D 0.696
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.696
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.696
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.694
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.694
Bo9g011210 Brassica oleracea Bo9g011210 I 0.693
Bra036552 Brassica rapa Bra036552 I 0.693
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.693
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.693
POPTR_0003s07700 Populus trichocarpa POPTR_0003s07700 I 0.693
Si019772m.g Setaria italica Si019772m.g I 0.693
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.693
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.693
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.693
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.692
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.692
TINY Arabidopsis thaliana AT5G25810 D 0.691
Bo7g095710 Brassica oleracea Bo7g095710 I 0.691
Bra009862 Brassica rapa Bra009862 I 0.691
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.691
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.691
AC198403.3_FG001 Zea mays AC198403.3_FG001 I 0.690
POPTR_0001s15550 Populus trichocarpa POPTR_0001s15550 I 0.690
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.689
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.689
SapurV1A.1528s0030 Salix purpurea SapurV1A.1528s0030 I 0.689
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.688
Bo4g184540 Brassica oleracea Bo4g184540 I 0.687
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.686
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.686
30174.m008790 Ricinus communis 30174.m008790 I 0.686
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.686
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.685
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.684
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.681
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.681
OB11G16300 Oryza brachyantha OB11G16300 I 0.681
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.681
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.681
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.681
ERF034 Arabidopsis thaliana AT2G44940 D 0.680
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.680
GSMUA_Achr8G16250_001 Musa acuminata GSMUA_Achr8G16250_001 I 0.680
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.680
TCM_005639 Theobroma cacao TCM_005639 I 0.680
Cla015715 Citrullus lanatus Cla015715 I 0.680
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.680
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.680
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.680
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.680
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.679
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.679
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.679
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.679
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.678
Bra017302 Brassica rapa Bra017302 I 0.678
F775_17299 Aegilops tauschii F775_17299 I 0.678
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.678
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.678
MLOC_55144 Hordeum vulgare MLOC_55144 I 0.678
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.678
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.678
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.678
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.678
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.678
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.678
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.678
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.678
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.678
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.678
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.678
OS02G0657000 Oryza sativa OS02G0657000 I 0.678
OS04G0550200 Oryza sativa OS04G0550200 I 0.678
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.678
Si012254m.g Setaria italica Si012254m.g I 0.678
TCM_014892 Theobroma cacao TCM_014892 I 0.678
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I 0.678
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I 0.678
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I 0.678
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.678
TRIUR3_32331 Triticum urartu TRIUR3_32331 I 0.678
Pm017610 Prunus mume Pm017610 I 0.678
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.678
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.678
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.678
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.678
Bo3g037480 Brassica oleracea Bo3g037480 I 0.677
Bra000366 Brassica rapa Bra000366 I 0.677
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I 0.677
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I 0.677
PK01156.1 Cannabis sativa PK01156.1 I 0.677