Carubv10002601m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10002601m.g T007818_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.836 1.000
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.836 1.000
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.711 0.880
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.711 0.880
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.711 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.696 0.860
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.696 0.860
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.685 0.840
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.685 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002601m AP2 33 84

Links

Other AP2 family TFs
Other Capsella rubella TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TINY Arabidopsis thaliana AT5G25810 D 0.836
Bo7g095710 Brassica oleracea Bo7g095710 I 0.836
Bra009862 Brassica rapa Bra009862 I 0.836
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.833
MDP0000790788 Malus domestica MDP0000790788 I 0.792
Cla022553 Citrullus lanatus Cla022553 I 0.786
Cla021417 Citrullus lanatus Cla021417 I 0.785
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.784
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.783
Bo9g170060 Brassica oleracea Bo9g170060 I 0.782
Bra008952 Brassica rapa Bra008952 I 0.782
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.779
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.779
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.778
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.778
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.778
DREB3 Arabidopsis thaliana AT5G11590 I 0.777
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.777
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.777
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.777
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.776
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.775
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.775
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.775
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.775
TCM_037194 Theobroma cacao TCM_037194 I 0.775
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.775
Pm005151 Prunus mume Pm005151 I 0.775
29794.m003381 Ricinus communis 29794.m003381 I 0.775
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.775
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.775
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.775
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.775
MDP0000241650 Malus domestica MDP0000241650 I 0.775
MDP0000242611 Malus domestica MDP0000242611 I 0.775
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.775
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.775
PK28082.1 Cannabis sativa PK28082.1 I 0.775
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.773
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.773
Bo9g011210 Brassica oleracea Bo9g011210 I 0.772
Bra036552 Brassica rapa Bra036552 I 0.772
mgf024703m Mimulus guttatus mgf024703m I 0.772
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.772
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.772
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.769
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.769
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.767
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.766
Bra023332 Brassica rapa Bra023332 I 0.765
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.765
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.765
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.764
Bo2g010530 Brassica oleracea Bo2g010530 I 0.762
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.762
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.760
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.757
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.757
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.755
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.755
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.755
mgf026339m Mimulus guttatus mgf026339m I 0.755
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.754
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.754
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.752
MDP0000174352 Malus domestica MDP0000174352 I 0.752
Ca_14911 Cicer arietinum Ca_14911 I 0.751
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.751
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.750
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.749
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.749
Ca_01908 Cicer arietinum Ca_01908 I 0.749
Ca_28185 Cicer arietinum Ca_28185 I 0.749
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.749
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.749
Bo6g077080 Brassica oleracea Bo6g077080 I 0.737
Bra003415 Brassica rapa Bra003415 I 0.737
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.736
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.735
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.733
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.733
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.733
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.732
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.729
Bo8g095240 Brassica oleracea Bo8g095240 I 0.728
Bra007539 Brassica rapa Bra007539 I 0.728
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.728
mgf022971m Mimulus guttatus mgf022971m I 0.722
Cla015715 Citrullus lanatus Cla015715 I 0.720
Bra037041 Brassica rapa Bra037041 I 0.719
Bo3g171090 Brassica oleracea Bo3g171090 I 0.718
Bo7g115860 Brassica oleracea Bo7g115860 I 0.718
Bra034535 Brassica rapa Bra034535 I 0.718
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.718
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.717
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.717
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.717
TCM_028851 Theobroma cacao TCM_028851 I 0.716
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.716
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.714
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.713
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.712
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.712
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.712
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.712
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.712
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.712
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.712
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.712
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.712
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.712
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.712
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.712
OS02G0656600 Oryza sativa OS02G0656600 I 0.712
OS04G0549700 Oryza sativa OS04G0549700 I 0.712
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.712
Si010703m.g Setaria italica Si010703m.g I 0.712
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.712
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.712
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.712
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.712
ERF043 Arabidopsis thaliana AT4G32800 D 0.711
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.711
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.711
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.711
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.711
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.711
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.710
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.710
30146.m003535 Ricinus communis 30146.m003535 I 0.709
Ca_18948 Cicer arietinum Ca_18948 I 0.708
VIT_14s0006g02290 Vitis vinifera VIT_14s0006g02290 I 0.707
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.706
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.706
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.705
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.703
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.702
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.702
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.702
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.702
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.702
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.702
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.702
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.700
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.700
Pm017610 Prunus mume Pm017610 I 0.700
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.700
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.700
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.699
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.699
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.698
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.697
Pm023417 Prunus mume Pm023417 I 0.697
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.697
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.697
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.697
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.697
ERF034 Arabidopsis thaliana AT2G44940 D 0.696
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.696
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.696
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.696
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.696
mgf024816m Mimulus guttatus mgf024816m I 0.696
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.696
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.696
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.696
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.696
TCM_005639 Theobroma cacao TCM_005639 I 0.695
ERF042 Arabidopsis thaliana AT2G25820 I 0.694
Bra034273 Brassica rapa Bra034273 I 0.694
30174.m008790 Ricinus communis 30174.m008790 I 0.694
Bo1g009990 Brassica oleracea Bo1g009990 I 0.693
Bra011383 Brassica rapa Bra011383 I 0.693
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.693
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.691
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.691
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.691
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.691
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.691
Bo4g024220 Brassica oleracea Bo4g024220 I 0.690
Bo4g195280 Brassica oleracea Bo4g195280 I 0.690
Bra004878 Brassica rapa Bra004878 I 0.690
Bra040333 Brassica rapa Bra040333 I 0.690
Cla012859 Citrullus lanatus Cla012859 I 0.690
Pm013463 Prunus mume Pm013463 I 0.690
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.690
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.690
OB04G27840 Oryza brachyantha OB04G27840 I 0.689
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.689
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.688
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.688
TCM_014892 Theobroma cacao TCM_014892 I 0.686
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.686
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.686
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.686
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.686
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.686
Al_scaffold_0004_2818 Arabidopsis lyrata Al_scaffold_0004_2818 I 0.685
Al_scaffold_0006_1828 Arabidopsis lyrata Al_scaffold_0006_1828 I 0.685
ERF035 Arabidopsis thaliana AT3G60490 D 0.685
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.685
TCM_015930 Theobroma cacao TCM_015930 I 0.685
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.685
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.685
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.685
Bo3g037480 Brassica oleracea Bo3g037480 I 0.684
Bra000366 Brassica rapa Bra000366 I 0.684
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.684
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.684
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.683
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.683
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.683
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.683
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.683
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.681
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.681
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.681
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.681
Ca_12765 Cicer arietinum Ca_12765 I 0.681
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.681
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.681
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.681
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.681
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.680
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.680
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.680
F775_11989 Aegilops tauschii F775_11989 I 0.679
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.679
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.679
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.679
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.679
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.678
PK01156.1 Cannabis sativa PK01156.1 I 0.678
PK25970.1 Cannabis sativa PK25970.1 I 0.678
Bo4g158810 Brassica oleracea Bo4g158810 I 0.677
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.677
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.677