Bostr.29827s0238 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.29827s0238 T007643_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.833 0.960
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.833 0.960
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.708 0.840
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.708 0.840
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.708 0.840
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.693 0.820
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.693 0.820
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.685 0.820
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.685 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.29827s0238.1.p AP2 33 84

Links

Other AP2 family TFs
Other Boechera stricta TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TINY Arabidopsis thaliana AT5G25810 D 0.833
Bo7g095710 Brassica oleracea Bo7g095710 I 0.833
Bra009862 Brassica rapa Bra009862 I 0.833
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.833
MDP0000790788 Malus domestica MDP0000790788 I 0.789
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.784
Cla022553 Citrullus lanatus Cla022553 I 0.783
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.783
Cla021417 Citrullus lanatus Cla021417 I 0.782
Bo9g170060 Brassica oleracea Bo9g170060 I 0.779
Bra008952 Brassica rapa Bra008952 I 0.779
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.776
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.776
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.776
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.776
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.776
DREB3 Arabidopsis thaliana AT5G11590 I 0.774
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.774
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.774
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.774
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.773
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.772
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.772
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.772
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.772
TCM_037194 Theobroma cacao TCM_037194 I 0.772
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.772
Pm005151 Prunus mume Pm005151 I 0.772
29794.m003381 Ricinus communis 29794.m003381 I 0.772
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.772
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.772
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.772
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.772
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.772
MDP0000241650 Malus domestica MDP0000241650 I 0.772
MDP0000242611 Malus domestica MDP0000242611 I 0.772
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.772
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.772
PK28082.1 Cannabis sativa PK28082.1 I 0.772
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.770
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.770
Bo9g011210 Brassica oleracea Bo9g011210 I 0.769
Bra036552 Brassica rapa Bra036552 I 0.769
mgf024703m Mimulus guttatus mgf024703m I 0.769
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.769
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.766
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.766
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.764
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.763
Bra023332 Brassica rapa Bra023332 I 0.762
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.762
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.762
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.761
Bo2g010530 Brassica oleracea Bo2g010530 I 0.759
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.759
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.757
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.754
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.754
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.752
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.752
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.752
mgf026339m Mimulus guttatus mgf026339m I 0.752
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.751
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.751
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.750
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.749
MDP0000174352 Malus domestica MDP0000174352 I 0.749
Ca_14911 Cicer arietinum Ca_14911 I 0.748
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.748
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.746
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.746
Ca_01908 Cicer arietinum Ca_01908 I 0.746
Ca_28185 Cicer arietinum Ca_28185 I 0.746
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.746
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.746
Bo6g077080 Brassica oleracea Bo6g077080 I 0.734
Bra003415 Brassica rapa Bra003415 I 0.734
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.733
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.732
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.730
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.730
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.730
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.729
Bo8g095240 Brassica oleracea Bo8g095240 I 0.728
Bra007539 Brassica rapa Bra007539 I 0.728
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.728
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.726
mgf022971m Mimulus guttatus mgf022971m I 0.719
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.718
Cla015715 Citrullus lanatus Cla015715 I 0.717
Bra037041 Brassica rapa Bra037041 I 0.716
Bo3g171090 Brassica oleracea Bo3g171090 I 0.715
Bo7g115860 Brassica oleracea Bo7g115860 I 0.715
Bra034535 Brassica rapa Bra034535 I 0.715
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.715
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.714
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.714
TCM_028851 Theobroma cacao TCM_028851 I 0.713
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.713
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.712
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.711
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.711
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.711
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.710
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.709
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.709
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.709
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.709
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.709
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.709
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.709
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.709
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.709
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.709
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.709
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.709
OS02G0656600 Oryza sativa OS02G0656600 I 0.709
OS04G0549700 Oryza sativa OS04G0549700 I 0.709
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.709
Si010703m.g Setaria italica Si010703m.g I 0.709
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.709
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.709
VIT_14s0006g02290 Vitis vinifera VIT_14s0006g02290 I 0.709
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.709
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.709
ERF043 Arabidopsis thaliana AT4G32800 D 0.708
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.708
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.708
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.708
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.708
30146.m003535 Ricinus communis 30146.m003535 I 0.706
Ca_18948 Cicer arietinum Ca_18948 I 0.705
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.705
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.703
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.703
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.701
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.700
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.700
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.700
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.699
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.699
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.699
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.699
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.699
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.699
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.699
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.697
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.697
Pm017610 Prunus mume Pm017610 I 0.697
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.697
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.697
ERF042 Arabidopsis thaliana AT2G25820 I 0.694
Bra034273 Brassica rapa Bra034273 I 0.694
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.694
Pm023417 Prunus mume Pm023417 I 0.694
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.694
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.694
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.694
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.694
ERF034 Arabidopsis thaliana AT2G44940 D 0.693
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.693
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.693
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.693
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.693
mgf024816m Mimulus guttatus mgf024816m I 0.693
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.693
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.693
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.693
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.693
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.693
TCM_005639 Theobroma cacao TCM_005639 I 0.692
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.692
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.692
30174.m008790 Ricinus communis 30174.m008790 I 0.691
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.691
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.691
Bo1g009990 Brassica oleracea Bo1g009990 I 0.690
Bra011383 Brassica rapa Bra011383 I 0.690
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.689
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.688
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.688
Bo4g024220 Brassica oleracea Bo4g024220 I 0.687
Bo4g195280 Brassica oleracea Bo4g195280 I 0.687
Bra004878 Brassica rapa Bra004878 I 0.687
Bra040333 Brassica rapa Bra040333 I 0.687
Cla012859 Citrullus lanatus Cla012859 I 0.687
Pm013463 Prunus mume Pm013463 I 0.687
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.687
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.687
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.687
OB04G27840 Oryza brachyantha OB04G27840 I 0.686
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.686
ERF035 Arabidopsis thaliana AT3G60490 D 0.685
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.685
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.685
TCM_014892 Theobroma cacao TCM_014892 I 0.683
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.683
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.683
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.683
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.683
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.683
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.683
Al_scaffold_0004_2818 Arabidopsis lyrata Al_scaffold_0004_2818 I 0.682
Al_scaffold_0006_1828 Arabidopsis lyrata Al_scaffold_0006_1828 I 0.682
TCM_015930 Theobroma cacao TCM_015930 I 0.682
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.682
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.682
Bo3g037480 Brassica oleracea Bo3g037480 I 0.681
Bra000366 Brassica rapa Bra000366 I 0.681
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.681
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.681
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.681
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.681
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.680
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.680
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.680
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.680
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.678
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.678
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.678
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.678
Ca_12765 Cicer arietinum Ca_12765 I 0.678
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.678
PK25970.1 Cannabis sativa PK25970.1 I 0.678
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.678
Bo3g028500 Brassica oleracea Bo3g028500 I 0.677
Bo4g158810 Brassica oleracea Bo4g158810 I 0.677
Bra023026 Brassica rapa Bra023026 I 0.677
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.677
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.677
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.677
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.677