gene08873-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene08873-v1.0-hybrid T008381_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.716 0.880
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.716 0.880
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.716 0.880
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.700 0.860
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.700 0.860
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.700 0.860
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.700 0.840
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.685 0.880
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.685 0.880
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.681 0.900
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.680 0.860
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.680 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna08873.1-v1.0-hybrid AP2 43 94

Links

Other AP2 family TFs
Other Fragaria vesca TFs

206 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D02102 Eucalyptus grandis Eucgr.D02102 I 0.757
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.747
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.740
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.730
Ciclev10024602m.g Citrus clementina Ciclev10024602m.g I 0.728
orange1.1g023148m.g Citrus sinensis orange1.1g023148m.g I 0.728
TCM_015930 Theobroma cacao TCM_015930 I 0.726
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.724
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.723
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.723
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.723
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.723
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.723
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.723
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.723
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.723
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.723
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.723
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.723
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.723
OS02G0656600 Oryza sativa OS02G0656600 I 0.723
OS04G0549700 Oryza sativa OS04G0549700 I 0.723
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.723
Si010703m.g Setaria italica Si010703m.g I 0.723
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.723
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.723
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.723
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.723
Gorai.007G028800 Gossypium raimondii Gorai.007G028800 I 0.721
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.717
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.717
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.717
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.717
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.717
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.717
Bo4g036220 Brassica oleracea Bo4g036220 I 0.716
Bra005314 Brassica rapa Bra005314 I 0.716
ATERF38 Arabidopsis lyrata fgenesh2_kg.4__1597__AT2G35700.1 I 0.716
Cagra.0993s0081 Capsella grandiflora Cagra.0993s0081 I 0.716
Carubv10024111m.g Capsella rubella Carubv10024111m.g I 0.716
Thhalv10017258m.g Eutrema salsugineum Thhalv10017258m.g I 0.716
Q3HS43_BRANA Brassica napus Q3HS43_BRANA D 0.716
Q3HS44_BRANA Brassica napus Q3HS44_BRANA D 0.716
Q5MAR7_BRANA Brassica napus Q5MAR7_BRANA D 0.716
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.714
Pm023417 Prunus mume Pm023417 I 0.714
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.714
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.714
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.713
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.713
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.712
Bostr.23794s0528 Boechera stricta Bostr.23794s0528 I 0.712
Cla005715 Citrullus lanatus Cla005715 I 0.711
Cucsa.321050 Cucumis sativus Cucsa.321050 I 0.711
BGIOSGA016884 Oryza indica BGIOSGA016884 I 0.709
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.709
LPERR02G21590 Leersia perrieri LPERR02G21590 I 0.709
MLOC_3095 Hordeum vulgare MLOC_3095 I 0.709
OGLUM02G27070 Oryza glumaepatula OGLUM02G27070 I 0.709
OGLUM04G20790 Oryza glumaepatula OGLUM04G20790 I 0.709
OMERI02G25910 Oryza meridionalis OMERI02G25910 I 0.709
OMERI04G17290 Oryza meridionalis OMERI04G17290 I 0.709
ONIVA02G28990 Oryza nivara ONIVA02G28990 I 0.709
ONIVA04G19090 Oryza nivara ONIVA04G19090 I 0.709
OPUNC02G24230 Oryza punctata OPUNC02G24230 I 0.709
OPUNC04G18530 Oryza punctata OPUNC04G18530 I 0.709
ORGLA04G0179000 Oryza glaberrima ORGLA04G0179000 I 0.709
ORUFI02G28010 Oryza rufipogon ORUFI02G28010 I 0.709
ORUFI04G22430 Oryza rufipogon ORUFI04G22430 I 0.709
OS02G0657000 Oryza sativa OS02G0657000 I 0.709
OS04G0550200 Oryza sativa OS04G0550200 I 0.709
Si012254m.g Setaria italica Si012254m.g I 0.709
Traes_6DL_3019F176A Triticum aestivum Traes_6DL_3019F176A I 0.709
Pavir.Ga01093 Panicum virgatum Pavir.Ga01093 I 0.709
Pavir.Gb01128 Panicum virgatum Pavir.Gb01128 I 0.709
Bo6g077080 Brassica oleracea Bo6g077080 I 0.707
Bra003415 Brassica rapa Bra003415 I 0.707
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.707
Ca_12765 Cicer arietinum Ca_12765 I 0.704
GRMZM2G172936 Zea mays GRMZM2G172936 I 0.703
LPERR04G16900 Leersia perrieri LPERR04G16900 I 0.703
Bostr.30275s0134 Boechera stricta Bostr.30275s0134 I 0.703
Carubv10005867m.g Capsella rubella Carubv10005867m.g I 0.703
MDP0000790788 Malus domestica MDP0000790788 I 0.703
BRADI3G50630 Brachypodium distachyon BRADI3G50630 I 0.702
Bo7g104770 Brassica oleracea Bo7g104770 I 0.701
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.701
28353.m000054 Ricinus communis 28353.m000054 I 0.701
ERF038 Arabidopsis thaliana AT2G35700 D 0.700
ERF039 Arabidopsis thaliana AT4G16750 D 0.700
Bo1g053270 Brassica oleracea Bo1g053270 I 0.700
Bra012693 Brassica rapa Bra012693 I 0.700
Bra040092 Brassica rapa Bra040092 I 0.700
fgenesh2_kg.7__2633__AT4G16750.1 Arabidopsis lyrata fgenesh2_kg.7__2633__AT4G16750.1 I 0.700
GLYMA11G03790 Glycine max GLYMA11G03790 I 0.700
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.700
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.700
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.700
Thhalv10026276m.g Eutrema salsugineum Thhalv10026276m.g I 0.700
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.698
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.698
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.698
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.697
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.697
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.697
Si017865m.g Setaria italica Si017865m.g I 0.697
Cla012859 Citrullus lanatus Cla012859 I 0.697
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.697
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.697
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.697
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.695
PK25970.1 Cannabis sativa PK25970.1 I 0.695
Bo3g028500 Brassica oleracea Bo3g028500 I 0.694
Bra023026 Brassica rapa Bra023026 I 0.694
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.693
F775_04501 Aegilops tauschii F775_04501 I 0.692
Traes_2AL_43491B9E0 Triticum aestivum Traes_2AL_43491B9E0 I 0.692
Traes_2BL_FC0F8A3DC Triticum aestivum Traes_2BL_FC0F8A3DC I 0.692
Traes_2DL_A336122501 Triticum aestivum Traes_2DL_A336122501 I 0.692
TCM_005639 Theobroma cacao TCM_005639 I 0.691
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.691
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.690
mgf024816m Mimulus guttatus mgf024816m I 0.690
BGIOSGA016883 Oryza indica BGIOSGA016883 I 0.689
OBART04G20820 Oryza barthii OBART04G20820 I 0.689
OGLUM04G20760 Oryza glumaepatula OGLUM04G20760 I 0.689
OMERI04G17270 Oryza meridionalis OMERI04G17270 I 0.689
ONIVA04G19060 Oryza nivara ONIVA04G19060 I 0.689
OPUNC04G18520 Oryza punctata OPUNC04G18520 I 0.689
ORGLA04G0178700 Oryza glaberrima ORGLA04G0178700 I 0.689
ORUFI04G22410 Oryza rufipogon ORUFI04G22410 I 0.689
OS04G0549800 Oryza sativa OS04G0549800 I 0.689
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.688
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.688
Gorai.007G087100 Gossypium raimondii Gorai.007G087100 I 0.688
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.687
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.687
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.687
Bo8g095240 Brassica oleracea Bo8g095240 I 0.686
Bra007539 Brassica rapa Bra007539 I 0.686
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.686
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.686
Cla017050 Citrullus lanatus Cla017050 I 0.686
30174.m008790 Ricinus communis 30174.m008790 I 0.686
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.686
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.686
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.686
ERF034 Arabidopsis thaliana AT2G44940 D 0.685
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.685
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.685
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.685
Pm017610 Prunus mume Pm017610 I 0.685
cassava17387.m1 Manihot esculenta cassava17387.m1 I 0.685
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.685
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.685
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.685
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.685
Pavir.Ab02601 Panicum virgatum Pavir.Ab02601 I 0.685
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.685
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.685
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.684
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.682
LjT33K05.50.nd Lotus japonicus LjT33K05.50.nd I 0.682
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.681
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.681
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.681
Si039427m.g Setaria italica Si039427m.g I 0.681
Ca_01908 Cicer arietinum Ca_01908 I 0.681
Ca_28185 Cicer arietinum Ca_28185 I 0.681
Pm013463 Prunus mume Pm013463 I 0.681
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.681
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.681
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.681
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.681
TINY Arabidopsis thaliana AT5G25810 D 0.680
Bo7g095710 Brassica oleracea Bo7g095710 I 0.680
Bo9g011210 Brassica oleracea Bo9g011210 I 0.680
Bra009862 Brassica rapa Bra009862 I 0.680
Bra036552 Brassica rapa Bra036552 I 0.680
POPTR_0003s04920 Populus trichocarpa POPTR_0003s04920 I 0.680
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.680
MDP0000174352 Malus domestica MDP0000174352 I 0.680
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.680
Bo4g024220 Brassica oleracea Bo4g024220 I 0.679
Bo4g195280 Brassica oleracea Bo4g195280 I 0.679
Bra004878 Brassica rapa Bra004878 I 0.679
Bra040333 Brassica rapa Bra040333 I 0.679
GLYMA01G35010 Glycine max GLYMA01G35010 I 0.679
GLYMA09G32730 Glycine max GLYMA09G32730 I 0.679
MDP0000652413 Malus domestica MDP0000652413 I 0.679
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.678
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.678
TCM_014892 Theobroma cacao TCM_014892 I 0.678
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.678
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.678
Gorai.001G176500 Gossypium raimondii Gorai.001G176500 I 0.678
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.677
MTR_6g088405 Medicago truncatula MTR_6g088405 I 0.677
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.677
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.677
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.677
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.677
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.677
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.677
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.677
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.677