Bra009862 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra009862 T001048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.836 1.000
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.836 1.000
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.711 0.880
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.711 0.880
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.711 0.880
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.696 0.860
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.696 0.860
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.685 0.840
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.685 0.840
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009862.1-P AP2 35 86

Links

Other AP2 family TFs
Other Brassica rapa TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TINY Arabidopsis thaliana AT5G25810 D 0.836
Bo7g095710 Brassica oleracea Bo7g095710 I 0.836
Carubv10002601m.g Capsella rubella Carubv10002601m.g I 0.836
Bostr.29827s0238 Boechera stricta Bostr.29827s0238 I 0.833
MDP0000790788 Malus domestica MDP0000790788 I 0.792
Cla022553 Citrullus lanatus Cla022553 I 0.786
Cla021417 Citrullus lanatus Cla021417 I 0.785
Cucsa.259750 Cucumis sativus Cucsa.259750 I 0.784
Cucsa.161310 Cucumis sativus Cucsa.161310 I 0.783
Bo9g170060 Brassica oleracea Bo9g170060 I 0.782
Bra008952 Brassica rapa Bra008952 I 0.782
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.779
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.779
MTR_3g110205 Medicago truncatula MTR_3g110205 I 0.778
Eucgr.C00546 Eucalyptus grandis Eucgr.C00546 I 0.778
Thhalv10015895m.g Eutrema salsugineum Thhalv10015895m.g I 0.778
DREB3 Arabidopsis thaliana AT5G11590 I 0.777
TINY2 Arabidopsis lyrata fgenesh2_kg.6__1130__AT5G11590.1 I 0.777
Bostr.20055s0079 Boechera stricta Bostr.20055s0079 I 0.777
Carubv10003136m.g Capsella rubella Carubv10003136m.g I 0.777
AMTR_s00056p00064760 Amborella trichopoda AMTR_s00056p00064760 I 0.776
GLYMA14G22740 Glycine max GLYMA14G22740 I 0.775
PGSC0003DMG400002235 Solanum tuberosum PGSC0003DMG400002235 I 0.775
PRUPE_ppa009533mg Prunus persica PRUPE_ppa009533mg I 0.775
Solyc08g066660.1 Solanum lycopersicum Solyc08g066660.1 I 0.775
TCM_037194 Theobroma cacao TCM_037194 I 0.775
VIT_04s0008g03400 Vitis vinifera VIT_04s0008g03400 I 0.775
Pm005151 Prunus mume Pm005151 I 0.775
29794.m003381 Ricinus communis 29794.m003381 I 0.775
cassava17185.m1 Manihot esculenta cassava17185.m1 I 0.775
cassava18256.valid.m1 Manihot esculenta cassava18256.valid.m1 I 0.775
Ciclev10009370m.g Citrus clementina Ciclev10009370m.g I 0.775
gene08838-v1.0-hybrid Fragaria vesca gene08838-v1.0-hybrid I 0.775
MDP0000241650 Malus domestica MDP0000241650 I 0.775
MDP0000242611 Malus domestica MDP0000242611 I 0.775
orange1.1g027107m.g Citrus sinensis orange1.1g027107m.g I 0.775
SapurV1A.0291s0070 Salix purpurea SapurV1A.0291s0070 I 0.775
PK28082.1 Cannabis sativa PK28082.1 I 0.775
GLYMA07G02001 Glycine max GLYMA07G02001 I 0.773
GLYMA08G21650 Glycine max GLYMA08G21650 I 0.773
Bo9g011210 Brassica oleracea Bo9g011210 I 0.772
Bra036552 Brassica rapa Bra036552 I 0.772
mgf024703m Mimulus guttatus mgf024703m I 0.772
Gorai.010G106600 Gossypium raimondii Gorai.010G106600 I 0.772
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.772
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.769
GLYMA06G08990 Glycine max GLYMA06G08990 I 0.769
GLYMA04G08901 Glycine max GLYMA04G08901 I 0.767
Eucgr.C02928 Eucalyptus grandis Eucgr.C02928 I 0.766
Bra023332 Brassica rapa Bra023332 I 0.765
GLYMA17G27520 Glycine max GLYMA17G27520 I 0.765
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.765
PGSC0003DMG400012087 Solanum tuberosum PGSC0003DMG400012087 I 0.764
Bo2g010530 Brassica oleracea Bo2g010530 I 0.762
Gorai.004G289800 Gossypium raimondii Gorai.004G289800 I 0.762
MTR_8g013860 Medicago truncatula MTR_8g013860 I 0.760
VIT_15s0021g02110 Vitis vinifera VIT_15s0021g02110 I 0.757
Eucgr.E01593 Eucalyptus grandis Eucgr.E01593 I 0.757
GSMUA_Achr10G21470_001 Musa acuminata GSMUA_Achr10G21470_001 I 0.755
VIT_00s0341g00070 Vitis vinifera VIT_00s0341g00070 I 0.755
VIT_00s0632g00010 Vitis vinifera VIT_00s0632g00010 I 0.755
mgf026339m Mimulus guttatus mgf026339m I 0.755
GLYMA03G27050 Glycine max GLYMA03G27050 I 0.754
GLYMA07G14560 Glycine max GLYMA07G14560 I 0.754
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.752
MDP0000174352 Malus domestica MDP0000174352 I 0.752
Ca_14911 Cicer arietinum Ca_14911 I 0.751
chr1.LjT23O20.60.nd Lotus japonicus chr1.LjT23O20.60.nd I 0.751
PGSC0003DMG400018581 Solanum tuberosum PGSC0003DMG400018581 I 0.750
GSMUA_Achr7G09450_001 Musa acuminata GSMUA_Achr7G09450_001 I 0.749
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.749
Ca_01908 Cicer arietinum Ca_01908 I 0.749
Ca_28185 Cicer arietinum Ca_28185 I 0.749
evm.TU.supercontig_7.269 Carica papaya evm.TU.supercontig_7.269 I 0.749
gene25758-v1.0-hybrid Fragaria vesca gene25758-v1.0-hybrid I 0.749
Bo6g077080 Brassica oleracea Bo6g077080 I 0.737
Bra003415 Brassica rapa Bra003415 I 0.737
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.736
chr1.CM0171.140.nc Lotus japonicus chr1.CM0171.140.nc I 0.735
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.733
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.733
VIT_00s0341g00080 Vitis vinifera VIT_00s0341g00080 I 0.733
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.732
GSMUA_Achr1G01620_001 Musa acuminata GSMUA_Achr1G01620_001 I 0.729
Bo8g095240 Brassica oleracea Bo8g095240 I 0.728
Bra007539 Brassica rapa Bra007539 I 0.728
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.728
mgf022971m Mimulus guttatus mgf022971m I 0.722
Cla015715 Citrullus lanatus Cla015715 I 0.720
Bra037041 Brassica rapa Bra037041 I 0.719
Bo3g171090 Brassica oleracea Bo3g171090 I 0.718
Bo7g115860 Brassica oleracea Bo7g115860 I 0.718
Bra034535 Brassica rapa Bra034535 I 0.718
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.718
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.717
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.717
LjT33K05.60.nd Lotus japonicus LjT33K05.60.nd I 0.717
TCM_028851 Theobroma cacao TCM_028851 I 0.716
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.716
GLYMA15G02130 Glycine max GLYMA15G02130 I 0.714
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.713
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.712
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.712
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.712
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.712
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.712
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.712
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.712
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.712
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.712
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.712
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.712
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.712
OS02G0656600 Oryza sativa OS02G0656600 I 0.712
OS04G0549700 Oryza sativa OS04G0549700 I 0.712
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.712
Si010703m.g Setaria italica Si010703m.g I 0.712
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.712
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.712
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.712
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.712
ERF043 Arabidopsis thaliana AT4G32800 D 0.711
GLYMA13G43210 Glycine max GLYMA13G43210 I 0.711
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.711
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.711
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.711
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.711
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.710
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.710
30146.m003535 Ricinus communis 30146.m003535 I 0.709
Ca_18948 Cicer arietinum Ca_18948 I 0.708
VIT_14s0006g02290 Vitis vinifera VIT_14s0006g02290 I 0.707
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.706
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.706
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.705
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.703
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.702
PGSC0003DMG400004825 Solanum tuberosum PGSC0003DMG400004825 I 0.702
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.702
Solyc08g078410.1 Solanum lycopersicum Solyc08g078410.1 I 0.702
Solyc08g078420.1 Solanum lycopersicum Solyc08g078420.1 I 0.702
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.702
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.702
POPTR_0006s25500 Populus trichocarpa POPTR_0006s25500 I 0.700
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.700
Pm017610 Prunus mume Pm017610 I 0.700
SapurV1A.0272s0090 Salix purpurea SapurV1A.0272s0090 I 0.700
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.700
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.699
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.699
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.698
PRUPE_ppa010340mg Prunus persica PRUPE_ppa010340mg I 0.697
Pm023417 Prunus mume Pm023417 I 0.697
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.697
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.697
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.697
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.697
ERF034 Arabidopsis thaliana AT2G44940 D 0.696
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.696
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.696
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.696
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.696
mgf024816m Mimulus guttatus mgf024816m I 0.696
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.696
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.696
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.696
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.696
TCM_005639 Theobroma cacao TCM_005639 I 0.695
ERF042 Arabidopsis thaliana AT2G25820 I 0.694
Bra034273 Brassica rapa Bra034273 I 0.694
30174.m008790 Ricinus communis 30174.m008790 I 0.694
Bo1g009990 Brassica oleracea Bo1g009990 I 0.693
Bra011383 Brassica rapa Bra011383 I 0.693
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.693
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.691
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.691
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.691
Lus10004738.g Linum usitatissimum Lus10004738.g I 0.691
Lus10007799.g Linum usitatissimum Lus10007799.g I 0.691
Bo4g024220 Brassica oleracea Bo4g024220 I 0.690
Bo4g195280 Brassica oleracea Bo4g195280 I 0.690
Bra004878 Brassica rapa Bra004878 I 0.690
Bra040333 Brassica rapa Bra040333 I 0.690
Cla012859 Citrullus lanatus Cla012859 I 0.690
Pm013463 Prunus mume Pm013463 I 0.690
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.690
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.690
OB04G27840 Oryza brachyantha OB04G27840 I 0.689
cassava33300.m1 Manihot esculenta cassava33300.m1 I 0.689
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.688
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.688
TCM_014892 Theobroma cacao TCM_014892 I 0.686
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.686
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.686
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.686
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.686
LjT43F20.80.nd Lotus japonicus LjT43F20.80.nd I 0.686
Al_scaffold_0004_2818 Arabidopsis lyrata Al_scaffold_0004_2818 I 0.685
Al_scaffold_0006_1828 Arabidopsis lyrata Al_scaffold_0006_1828 I 0.685
ERF035 Arabidopsis thaliana AT3G60490 D 0.685
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.685
TCM_015930 Theobroma cacao TCM_015930 I 0.685
Bostr.26326s0067 Boechera stricta Bostr.26326s0067 I 0.685
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.685
Gorai.003G175100 Gossypium raimondii Gorai.003G175100 I 0.685
Bo3g037480 Brassica oleracea Bo3g037480 I 0.684
Bra000366 Brassica rapa Bra000366 I 0.684
PRUPE_ppa011735mg Prunus persica PRUPE_ppa011735mg I 0.684
Gorai.004G196700 Gossypium raimondii Gorai.004G196700 I 0.684
cassava15622.m1 Manihot esculenta cassava15622.m1 I 0.683
cassava4979.m1 Manihot esculenta cassava4979.m1 I 0.683
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.683
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.683
evm.TU.supercontig_40.39 Carica papaya evm.TU.supercontig_40.39 I 0.683
GLYMA05G04920 Glycine max GLYMA05G04920 I 0.681
GLYMA17G15310 Glycine max GLYMA17G15310 I 0.681
MTR_4g100650 Medicago truncatula MTR_4g100650 I 0.681
MTR_5g012910 Medicago truncatula MTR_5g012910 I 0.681
Ca_12765 Cicer arietinum Ca_12765 I 0.681
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.681
evm.TU.supercontig_89.73 Carica papaya evm.TU.supercontig_89.73 I 0.681
gene04810-v1.0-hybrid Fragaria vesca gene04810-v1.0-hybrid I 0.681
LjT37H17.40.nd Lotus japonicus LjT37H17.40.nd I 0.681
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.680
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.680
Lus10034949.g Linum usitatissimum Lus10034949.g I 0.680
F775_11989 Aegilops tauschii F775_11989 I 0.679
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.679
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.679
Lus10011123.g Linum usitatissimum Lus10011123.g I 0.679
Lus10043240.g Linum usitatissimum Lus10043240.g I 0.679
VIT_11s0016g03350 Vitis vinifera VIT_11s0016g03350 I 0.678
PK01156.1 Cannabis sativa PK01156.1 I 0.678
PK25970.1 Cannabis sativa PK25970.1 I 0.678
Bo4g158810 Brassica oleracea Bo4g158810 I 0.677
Ciclev10021740m.g Citrus clementina Ciclev10021740m.g I 0.677
orange1.1g024791m.g Citrus sinensis orange1.1g024791m.g I 0.677