Cucsa.251030 (Cucumis sativus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cucsa.251030 T007065_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.795 0.939
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.795 0.939
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.792 0.918
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.792 0.918
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.792 0.918
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.792 0.918
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.770 0.898
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.770 0.898
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.770 0.898
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.734 0.816
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.734 0.816
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.721 0.776
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.721 0.776
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.721 0.776
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.721 0.776
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.721 0.776
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.721 0.776
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.706 0.939
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.706 0.939
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.692 0.735
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.687 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.251030.1 AP2 53 103

Links

Other AP2 family TFs
Other Cucumis sativus TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006315 Citrullus lanatus Cla006315 I 0.834
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.834
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.831
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.831
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.828
PK23332.1 Cannabis sativa PK23332.1 I 0.828
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.827
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.827
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.827
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.821
mgf026642m Mimulus guttatus mgf026642m I 0.821
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.815
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.806
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.806
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.805
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.805
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.805
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.805
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.805
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.804
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.801
30147.m014313 Ricinus communis 30147.m014313 I 0.801
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.799
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.799
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.798
Cla002362 Citrullus lanatus Cla002362 I 0.796
DREB1D Arabidopsis thaliana AT5G51990 D 0.795
Bo9g104770 Brassica oleracea Bo9g104770 I 0.795
Bra028290 Brassica rapa Bra028290 I 0.795
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.795
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.795
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.795
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.795
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.795
DREB1A Arabidopsis thaliana AT4G25480 D 0.792
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.792
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.791
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.788
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.788
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.787
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.786
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.785
mgf017136m Mimulus guttatus mgf017136m I 0.782
MDP0000198054 Malus domestica MDP0000198054 I 0.781
Cla011674 Citrullus lanatus Cla011674 I 0.780
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.780
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.779
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.779
Pm023775 Prunus mume Pm023775 I 0.779
MDP0000154764 Malus domestica MDP0000154764 I 0.779
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.778
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.776
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.775
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.774
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.774
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.774
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.774
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.774
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.773
DREB1C Arabidopsis thaliana AT4G25470 D 0.770
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.768
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.768
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.768
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.765
mgf019061m Mimulus guttatus mgf019061m I 0.765
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.764
Pm023769 Prunus mume Pm023769 I 0.764
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.763
TCM_016175 Theobroma cacao TCM_016175 I 0.763
Pm023772 Prunus mume Pm023772 I 0.756
30190.m011120 Ricinus communis 30190.m011120 I 0.756
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.755
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.754
60638.m00016 Ricinus communis 60638.m00016 I 0.753
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.752
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.748
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.748
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.747
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.747
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.747
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.747
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.746
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.746
30190.m011119 Ricinus communis 30190.m011119 I 0.745
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.744
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.744
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.742
mgf026339m Mimulus guttatus mgf026339m I 0.741
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.739
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.739
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.739
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.739
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.738
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.738
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.738
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.736
Pm019386 Prunus mume Pm019386 I 0.735
DREB1G Oryza indica BGIOSGA008804 I 0.734
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.734
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.734
OBART02G27760 Oryza barthii OBART02G27760 I 0.734
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.734
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.734
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.734
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.734
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.734
DREB1G Oryza sativa OS02G0677300 D 0.734
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.734
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.734
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.734
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.733
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.731
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.731
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.729
Ca_04504 Cicer arietinum Ca_04504 I 0.728
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.728
Bo01335s010 Brassica oleracea Bo01335s010 I 0.727
Bra016763 Brassica rapa Bra016763 I 0.727
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.727
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.726
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.726
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.726
Bo8g108050 Brassica oleracea Bo8g108050 I 0.724
Bra026963 Brassica rapa Bra026963 I 0.724
Si018262m.g Setaria italica Si018262m.g I 0.724
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.724
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.724
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.724
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.724
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.724
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.724
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.723
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.723
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.723
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.723
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.722
DREB1F Arabidopsis thaliana AT1G12610 D 0.721
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.721
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.720
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.718
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.717
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.717
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.717
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.717
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.717
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.717
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.717
Ca_18948 Cicer arietinum Ca_18948 I 0.716
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.715
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.715
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.713
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.713
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.711
mgf016974m Mimulus guttatus mgf016974m I 0.711
mgf018631m Mimulus guttatus mgf018631m I 0.711
mgf018934m Mimulus guttatus mgf018934m I 0.711
mgf022408m Mimulus guttatus mgf022408m I 0.711
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.711
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.711
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.711
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.711
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.710
Bo7g110320 Brassica oleracea Bo7g110320 I 0.706
Bra019162 Brassica rapa Bra019162 I 0.706
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.706
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.706
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.706
Bra022770 Brassica rapa Bra022770 I 0.703
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.703
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.703
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.702
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.702
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.702
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.701
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.699
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.699
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.697
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.697
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.695
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.694
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.693
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.693
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.692
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.692
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.692
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.692
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.692
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.691
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.688
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.688
Ca_08732 Cicer arietinum Ca_08732 I 0.688
DREB1E Oryza indica BGIOSGA016950 I 0.687
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.687
OBART04G22220 Oryza barthii OBART04G22220 I 0.687
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.687
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.687
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.687
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.687
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.687
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.687
DREB1E Oryza sativa OS04G0572400 D 0.687
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.687
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.686
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.685
Bo5g016750 Brassica oleracea Bo5g016750 I 0.684
Bra019777 Brassica rapa Bra019777 I 0.684
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.684
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.683
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.683
mgf017477m Mimulus guttatus mgf017477m N 0.682
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.681
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.680
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.679