Bostr.13671s0200 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.13671s0200 T007571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.846 0.940
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.846 0.940
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.846 0.940
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.846 0.940
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.846 0.940
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.846 0.940
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.768 0.780
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.716 0.780
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.716 0.780
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.716 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.693 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.693 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.693 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.693 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.690 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.690 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13671s0200.1.p AP2 28 79

Links

Other AP2 family TFs
Other Boechera stricta TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1F Arabidopsis thaliana AT1G12610 D 0.846
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.846
Bo01335s010 Brassica oleracea Bo01335s010 I 0.842
Bra016763 Brassica rapa Bra016763 I 0.842
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.838
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.838
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.834
Bo8g108050 Brassica oleracea Bo8g108050 I 0.829
Bra026963 Brassica rapa Bra026963 I 0.829
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.768
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.768
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.768
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.768
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.768
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.766
Bo5g016750 Brassica oleracea Bo5g016750 I 0.764
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.762
mgf019061m Mimulus guttatus mgf019061m I 0.762
mgf017136m Mimulus guttatus mgf017136m I 0.759
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.756
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.756
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.755
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.746
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.746
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.744
Cla011674 Citrullus lanatus Cla011674 I 0.743
60638.m00016 Ricinus communis 60638.m00016 I 0.743
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.741
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.740
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.738
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.738
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.735
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.733
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.733
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.733
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.733
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.733
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.733
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.730
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.729
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.729
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.729
Bra027612 Brassica rapa Bra027612 I 0.725
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.725
Pm023772 Prunus mume Pm023772 I 0.725
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.725
MDP0000154764 Malus domestica MDP0000154764 I 0.725
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.724
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.724
30190.m011119 Ricinus communis 30190.m011119 I 0.723
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.723
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.723
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.722
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.722
Pm023775 Prunus mume Pm023775 I 0.722
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.722
mgf026642m Mimulus guttatus mgf026642m I 0.722
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.722
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.722
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.720
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.719
Pm023769 Prunus mume Pm023769 I 0.719
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.717
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.717
DREB1E Arabidopsis thaliana AT1G63030 D 0.716
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.715
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.715
PK23332.1 Cannabis sativa PK23332.1 I 0.715
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.714
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.713
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.712
MDP0000198054 Malus domestica MDP0000198054 I 0.712
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.712
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.711
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.711
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.710
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.710
Cla006315 Citrullus lanatus Cla006315 I 0.708
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.708
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.705
TCM_016175 Theobroma cacao TCM_016175 I 0.705
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.704
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.704
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.703
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.703
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.703
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.700
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.699
30190.m011120 Ricinus communis 30190.m011120 I 0.699
Bra019777 Brassica rapa Bra019777 I 0.697
30147.m014313 Ricinus communis 30147.m014313 I 0.696
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.695
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.694
DREB1A Arabidopsis thaliana AT4G25480 D 0.693
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.693
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.692
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.691
DREB1D Arabidopsis thaliana AT5G51990 D 0.690
Bo9g104770 Brassica oleracea Bo9g104770 I 0.690
Bra028290 Brassica rapa Bra028290 I 0.690
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.690
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.690
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.690
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.690
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.690
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.690
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.686
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.686
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.686
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.686
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.686
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.684
Cla002362 Citrullus lanatus Cla002362 I 0.684
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.682
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.681
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.681
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.680
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.679
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.678
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.678
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.678