CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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DREB1E
(
Arabidopsis thaliana
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
AT1G63030
T000430_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (DDF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. Overexpression of this gene results in delayed flowering and dwarfism, reduction of gibberellic acid biosynthesis, and increased tolerance to high levels of salt. This gene is expressed in all tissues examined, but most abundantly expressed in upper stems. Overexpression of this gene is also correlated with increased expression of GA biosynthetic genes and RD29A (a cold and drought responsive gene). Under salt stress it induces the expression of GAOX7, which encodes ad C20-GA inhibitor.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DREB1E
M00963_2.00
Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana
(Direct)
(Direct)
DREB1E
M06589_2.00
Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN
Dap-seq
OMalley et al.(2016)
DDF2_col_a
(Direct)
(Direct)
DREB1E
M09702_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1E_03
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ddf2
M00965_2.00
Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata
0.775
0.961
DREB1F
M00962_2.00
Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana
0.735
0.824
DREB1F
M00840_2.00
Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN
PBM
Franco-Zorrilla et al.(2014)
DDF1
0.735
0.824
DDF1
M00964_2.00
Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN
PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata
0.735
0.824
DREB1F
M06564_2.00
Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN
Dap-seq
OMalley et al.(2016)
DDF1_col_a
0.735
0.824
DREB1F
M06565_2.00
Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND
Dap-seq
OMalley et al.(2016)
DDF1_colamp_a
0.735
0.824
DREB1F
M09701_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DREB1F_03
0.735
0.824
For this family, TFs with SR scores >
0.677
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00963_2.00
AP2
28
79
PIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G63030.1
AP2
28
79
PIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGR
AT1G63030.2
AP2
28
79
PIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGR
Links
Other
AP2
family TFs
Other
Arabidopsis thaliana
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ddf2
Arabidopsis lyrata
fgenesh2_kg.2__175__AT1G63030.1
D
0.775
Bostr.22157s0019
Boechera stricta
Bostr.22157s0019
I
0.775
Thhalv10023865m.g
Eutrema salsugineum
Thhalv10023865m.g
I
0.775
Carubv10021910m.g
Capsella rubella
Carubv10021910m.g
I
0.756
Cagra.23885s0001
Capsella grandiflora
Cagra.23885s0001
I
0.756
Bo5g016750
Brassica oleracea
Bo5g016750
I
0.745
Solyc08g007830.1
Solanum lycopersicum
Solyc08g007830.1
I
0.738
DREB1F
Arabidopsis thaliana
AT1G12610
D
0.735
DDF1
Arabidopsis lyrata
fgenesh2_kg.1__1363__AT1G12610.1
D
0.735
Bra027612
Brassica rapa
Bra027612
I
0.731
Cagra.0568s0171
Capsella grandiflora
Cagra.0568s0171
I
0.728
Carubv10010303m.g
Capsella rubella
Carubv10010303m.g
I
0.728
Bo01335s010
Brassica oleracea
Bo01335s010
I
0.723
Bra016763
Brassica rapa
Bra016763
I
0.723
Bostr.13671s0200
Boechera stricta
Bostr.13671s0200
I
0.716
Thhalv10009978m.g
Eutrema salsugineum
Thhalv10009978m.g
I
0.715
Bra026963
Brassica rapa
Bra026963
I
0.710
Bo8g108050
Brassica oleracea
Bo8g108050
I
0.710
PGSC0003DMG400012526
Solanum tuberosum
PGSC0003DMG400012526
I
0.704
GLYMA10G38440
Glycine max
GLYMA10G38440
I
0.698
orange1.1g028094m.g
Citrus sinensis
orange1.1g028094m.g
I
0.691
Ciclev10007068m.g
Citrus clementina
Ciclev10007068m.g
I
0.691
GLYMA20G29410
Glycine max
GLYMA20G29410
I
0.691
Solyc12g056430.1
Solanum lycopersicum
Solyc12g056430.1
I
0.684
30190.m011119
Ricinus communis
30190.m011119
I
0.682
cassava41192.m1
Manihot esculenta
cassava41192.m1
I
0.682
Bra019777
Brassica rapa
Bra019777
I
0.678
GSMUA_Achr11G21630_001
Musa acuminata
GSMUA_Achr11G21630_001
I
0.678