30190.m011119 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 30190.m011119 T006774_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.748 0.760
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.734 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.734 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.734 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.734 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.734 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.734 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.721 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.721 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.718 0.820
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.718 0.820
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.718 0.820
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.718 0.820
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.683 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.683 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.683 0.760
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.682 0.720
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.682 0.720
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.682 0.720
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.680 0.780
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.680 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m011119 AP2 66 117

Links

Other AP2 family TFs
Other Ricinus communis TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.811
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.795
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.789
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.782
60638.m00016 Ricinus communis 60638.m00016 I 0.773
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.772
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.768
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.768
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.766
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.764
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.764
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.764
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.764
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.764
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.762
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.757
MDP0000198054 Malus domestica MDP0000198054 I 0.757
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.753
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.753
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.753
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.752
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.751
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.749
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.748
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.748
Cla011674 Citrullus lanatus Cla011674 I 0.748
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.748
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.748
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.747
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.747
Pm023775 Prunus mume Pm023775 I 0.747
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.747
mgf026642m Mimulus guttatus mgf026642m I 0.747
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.747
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.747
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.745
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.745
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.744
MDP0000154764 Malus domestica MDP0000154764 I 0.744
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.744
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.743
Ca_08732 Cicer arietinum Ca_08732 I 0.743
Cla006315 Citrullus lanatus Cla006315 I 0.743
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.742
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.742
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.741
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.741
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.741
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.741
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.741
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.741
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.741
PK23332.1 Cannabis sativa PK23332.1 I 0.741
Bo01335s010 Brassica oleracea Bo01335s010 I 0.740
Bra016763 Brassica rapa Bra016763 I 0.740
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.738
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.737
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.736
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.735
DREB1F Arabidopsis thaliana AT1G12610 D 0.734
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.734
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.734
Bo5g016750 Brassica oleracea Bo5g016750 I 0.733
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.733
Pm023769 Prunus mume Pm023769 I 0.733
Pm023772 Prunus mume Pm023772 I 0.733
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.732
Bo8g108050 Brassica oleracea Bo8g108050 I 0.731
Bra026963 Brassica rapa Bra026963 I 0.731
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.731
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.729
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.729
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.728
30147.m014313 Ricinus communis 30147.m014313 I 0.727
mgf017136m Mimulus guttatus mgf017136m I 0.727
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.726
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.726
TCM_016175 Theobroma cacao TCM_016175 I 0.725
30190.m011120 Ricinus communis 30190.m011120 I 0.725
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.725
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.724
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.724
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.723
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.723
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.723
DREB1D Arabidopsis thaliana AT5G51990 D 0.721
Bo9g104770 Brassica oleracea Bo9g104770 I 0.721
Bra028290 Brassica rapa Bra028290 I 0.721
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.721
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.721
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.721
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.721
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.721
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.719
DREB1A Arabidopsis thaliana AT4G25480 D 0.718
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.718
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.718
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.717
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.717
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.717
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.717
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.717
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.715
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.714
mgf019061m Mimulus guttatus mgf019061m I 0.714
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.713
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.711
Cla002362 Citrullus lanatus Cla002362 I 0.709
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.709
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.708
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.706
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.705
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.704
Bra027612 Brassica rapa Bra027612 I 0.704
mgf026339m Mimulus guttatus mgf026339m I 0.703
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.702
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.702
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.701
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.701
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.698
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.698
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.698
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.698
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.697
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.697
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.696
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.695
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.694
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.694
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.694
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.690
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.690
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.689
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.689
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.688
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.688
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.687
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.687
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.687
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.687
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.685
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.685
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.684
DREB1C Arabidopsis thaliana AT4G25470 D 0.683
DREB1E Arabidopsis thaliana AT1G63030 D 0.682
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.681
DREB1G Oryza indica BGIOSGA008804 I 0.680
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.680
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.680
OBART02G27760 Oryza barthii OBART02G27760 I 0.680
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.680
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.680
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.680
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.680
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.680
DREB1G Oryza sativa OS02G0677300 D 0.680
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.680
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.680
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.680
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.680
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.680
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.679
Bra019777 Brassica rapa Bra019777 I 0.678
Ca_03665 Cicer arietinum Ca_03665 N 0.678
Ca_18948 Cicer arietinum Ca_18948 I 0.678
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.678
Ca_02407 Cicer arietinum Ca_02407 N 0.677
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.677