Thhalv10027405m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10027405m.g T009998_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.804 0.960
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.804 0.960
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.800 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.800 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.800 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.800 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.778 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.778 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.778 0.920
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.736 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.736 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.723 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.723 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.723 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.723 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.723 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.723 0.760
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.705 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.705 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.700 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.690 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.679 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.679 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10027405m AP2 49 100

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

219 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.839
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.836
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.831
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.830
PK23332.1 Cannabis sativa PK23332.1 I 0.830
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.829
Cla006315 Citrullus lanatus Cla006315 I 0.829
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.829
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.829
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.823
mgf026642m Mimulus guttatus mgf026642m I 0.823
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.817
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.813
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.813
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.813
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.813
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.808
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.808
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.807
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.807
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.806
DREB1D Arabidopsis thaliana AT5G51990 D 0.804
Bo9g104770 Brassica oleracea Bo9g104770 I 0.804
Bra028290 Brassica rapa Bra028290 I 0.804
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.804
Cla002362 Citrullus lanatus Cla002362 I 0.804
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.804
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.804
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.804
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.804
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.803
30147.m014313 Ricinus communis 30147.m014313 I 0.803
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.801
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.801
DREB1A Arabidopsis thaliana AT4G25480 D 0.800
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.800
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.794
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.791
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.788
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.787
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.787
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.786
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.784
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.783
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.783
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.781
MDP0000154764 Malus domestica MDP0000154764 I 0.781
mgf017136m Mimulus guttatus mgf017136m I 0.780
MDP0000198054 Malus domestica MDP0000198054 I 0.780
Cla011674 Citrullus lanatus Cla011674 I 0.779
DREB1C Arabidopsis thaliana AT4G25470 D 0.778
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.778
Pm023775 Prunus mume Pm023775 I 0.778
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.777
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.777
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.776
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.776
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.776
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.776
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.772
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.770
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.770
TCM_016175 Theobroma cacao TCM_016175 I 0.768
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.767
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.765
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.764
mgf019061m Mimulus guttatus mgf019061m I 0.764
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.763
Pm023769 Prunus mume Pm023769 I 0.763
60638.m00016 Ricinus communis 60638.m00016 I 0.756
Pm023772 Prunus mume Pm023772 I 0.755
30190.m011120 Ricinus communis 30190.m011120 I 0.755
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.754
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.753
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.752
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.752
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.751
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.750
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.749
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.749
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.748
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.744
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.744
30190.m011119 Ricinus communis 30190.m011119 I 0.744
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.744
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.743
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.743
mgf026339m Mimulus guttatus mgf026339m I 0.742
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.741
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.741
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.741
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.740
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.740
Pm019386 Prunus mume Pm019386 I 0.738
DREB1G Oryza indica BGIOSGA008804 I 0.736
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.736
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.736
OBART02G27760 Oryza barthii OBART02G27760 I 0.736
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.736
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.736
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.736
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.736
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.736
DREB1G Oryza sativa OS02G0677300 D 0.736
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.736
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.736
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.736
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.735
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.735
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.733
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.732
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.731
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.730
Bo01335s010 Brassica oleracea Bo01335s010 I 0.729
Bra016763 Brassica rapa Bra016763 I 0.729
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.729
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.728
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.728
Bo8g108050 Brassica oleracea Bo8g108050 I 0.727
Bra026963 Brassica rapa Bra026963 I 0.727
Ca_04504 Cicer arietinum Ca_04504 I 0.727
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.726
Si018262m.g Setaria italica Si018262m.g I 0.726
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.726
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.726
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.725
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.725
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.725
DREB1F Arabidopsis thaliana AT1G12610 D 0.723
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.723
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.723
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.723
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.723
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.723
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.723
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.723
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.723
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.721
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.719
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.719
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.719
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.719
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.719
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.719
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.719
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.717
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.716
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.715
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.715
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.715
Ca_18948 Cicer arietinum Ca_18948 I 0.713
mgf016974m Mimulus guttatus mgf016974m I 0.713
mgf018631m Mimulus guttatus mgf018631m I 0.713
mgf018934m Mimulus guttatus mgf018934m I 0.713
mgf022408m Mimulus guttatus mgf022408m I 0.713
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.713
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.712
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.710
Bra022770 Brassica rapa Bra022770 I 0.709
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.709
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.709
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.709
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.708
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.708
Bo7g110320 Brassica oleracea Bo7g110320 I 0.705
Bra019162 Brassica rapa Bra019162 I 0.705
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.705
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.705
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.703
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.702
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.701
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.700
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.700
Gorai.008G280600 Gossypium raimondii Gorai.008G280600 I 0.700
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.700
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.698
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.698
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.698
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.696
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.694
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.693
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.692
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.692
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.691
DREB1E Oryza indica BGIOSGA016950 I 0.690
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.690
OBART04G22220 Oryza barthii OBART04G22220 I 0.690
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.690
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.690
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.690
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.690
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.690
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.690
DREB1E Oryza sativa OS04G0572400 D 0.690
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.690
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.689
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.689
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.688
Bo5g016750 Brassica oleracea Bo5g016750 I 0.687
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.687
Ca_08732 Cicer arietinum Ca_08732 I 0.687
Bra019777 Brassica rapa Bra019777 I 0.686
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.686
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.685
Bo8g050800 Brassica oleracea Bo8g050800 I 0.684
Bra010460 Brassica rapa Bra010460 I 0.684
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.684
mgf017477m Mimulus guttatus mgf017477m N 0.684
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.684
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.683
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.682
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.682
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.681
Ca_00768 Cicer arietinum Ca_00768 N 0.680
DREB1B Arabidopsis thaliana AT4G25490 D 0.679
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.679
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.679