MTR_6g465530 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g465530 T002917_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.729 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.729 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.729 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.729 0.860
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.729 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.729 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.729 0.880
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.714 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.714 0.840
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.688 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.688 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26595 AP2 31 82

Links

Other AP2 family TFs
Other Medicago truncatula TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.805
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.801
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.801
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.790
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.783
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.781
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.780
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.770
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.761
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.755
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.746
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.743
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.743
30147.m014313 Ricinus communis 30147.m014313 I 0.741
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.739
PK23332.1 Cannabis sativa PK23332.1 I 0.739
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.736
mgf026642m Mimulus guttatus mgf026642m I 0.732
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.731
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.731
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.731
DREB1C Arabidopsis thaliana AT4G25470 D 0.729
DREB1A Arabidopsis thaliana AT4G25480 D 0.729
Cla002362 Citrullus lanatus Cla002362 I 0.729
Cla011674 Citrullus lanatus Cla011674 I 0.728
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.728
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.728
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.728
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.728
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.728
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.728
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.728
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.726
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.726
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.725
TCM_016175 Theobroma cacao TCM_016175 I 0.725
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.725
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.725
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.725
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.724
Cla006315 Citrullus lanatus Cla006315 I 0.724
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.724
mgf026339m Mimulus guttatus mgf026339m I 0.724
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.724
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.724
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.722
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.720
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.718
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.718
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.718
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.717
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.717
MDP0000154764 Malus domestica MDP0000154764 I 0.717
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.716
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.716
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.716
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.716
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.716
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.715
DREB1D Arabidopsis thaliana AT5G51990 D 0.714
Bo9g104770 Brassica oleracea Bo9g104770 I 0.714
Bra028290 Brassica rapa Bra028290 I 0.714
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.714
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.714
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.714
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.714
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.714
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.713
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.713
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.713
Pm023775 Prunus mume Pm023775 I 0.713
30190.m011120 Ricinus communis 30190.m011120 I 0.712
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.710
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.710
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.710
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.710
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.707
mgf017136m Mimulus guttatus mgf017136m I 0.707
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.705
MDP0000198054 Malus domestica MDP0000198054 I 0.704
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.703
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.702
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.701
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.701
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.700
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.699
Pm023769 Prunus mume Pm023769 I 0.699
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.698
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.696
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.695
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.695
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.695
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.694
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.693
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.693
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.693
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.692
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.691
mgf019061m Mimulus guttatus mgf019061m I 0.691
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.689
DREB1G Oryza indica BGIOSGA008804 I 0.688
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.688
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.688
OBART02G27760 Oryza barthii OBART02G27760 I 0.688
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.688
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.688
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.688
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.688
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.688
DREB1G Oryza sativa OS02G0677300 D 0.688
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.688
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.688
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.688
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.684
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.684
Pm023772 Prunus mume Pm023772 I 0.683
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.683
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.681
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.679
Ca_04504 Cicer arietinum Ca_04504 I 0.679
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.679
Si018262m.g Setaria italica Si018262m.g I 0.678
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.677
Ca_18948 Cicer arietinum Ca_18948 I 0.677