MTR_6g466000 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g466000 T002921_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.736 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.736 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.725 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.725 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.725 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.725 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.715 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.715 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.715 0.840
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.687 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.687 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.687 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.687 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.687 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.687 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.684 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.684 0.740
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.680 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26611 AP2 55 106

Links

Other AP2 family TFs
Other Medicago truncatula TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.844
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.840
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.825
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.816
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.813
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.806
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.801
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.793
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.778
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.773
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.773
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.768
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.768
mgf026642m Mimulus guttatus mgf026642m I 0.755
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.754
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.753
Cla011674 Citrullus lanatus Cla011674 I 0.751
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.751
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.751
PK23332.1 Cannabis sativa PK23332.1 I 0.751
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.749
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.747
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.747
TCM_016175 Theobroma cacao TCM_016175 I 0.747
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.747
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.747
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.747
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.747
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.747
mgf026339m Mimulus guttatus mgf026339m I 0.746
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.746
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.744
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.743
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.741
Cla002362 Citrullus lanatus Cla002362 I 0.741
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.740
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.740
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.740
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.739
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.739
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.739
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.739
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.739
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.739
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.739
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.739
MDP0000154764 Malus domestica MDP0000154764 I 0.739
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.738
DREB1D Arabidopsis thaliana AT5G51990 D 0.736
Bo9g104770 Brassica oleracea Bo9g104770 I 0.736
Bra028290 Brassica rapa Bra028290 I 0.736
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.736
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.736
Cla006315 Citrullus lanatus Cla006315 I 0.736
Pm023775 Prunus mume Pm023775 I 0.736
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.736
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.736
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.736
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.736
30190.m011120 Ricinus communis 30190.m011120 I 0.734
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.732
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.732
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.732
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.730
mgf017136m Mimulus guttatus mgf017136m I 0.729
MDP0000198054 Malus domestica MDP0000198054 I 0.726
DREB1A Arabidopsis thaliana AT4G25480 D 0.725
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.725
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.724
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.722
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.722
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.721
Pm023769 Prunus mume Pm023769 I 0.721
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.720
30147.m014313 Ricinus communis 30147.m014313 I 0.720
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.719
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.719
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.717
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.717
DREB1C Arabidopsis thaliana AT4G25470 D 0.715
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.714
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.714
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.714
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.714
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.714
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.713
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.713
mgf019061m Mimulus guttatus mgf019061m I 0.713
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.712
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.711
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.711
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.706
Pm023772 Prunus mume Pm023772 I 0.705
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.703
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.701
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.699
Ca_18948 Cicer arietinum Ca_18948 I 0.699
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.698
60638.m00016 Ricinus communis 60638.m00016 I 0.697
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.696
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.694
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.693
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.693
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.693
Ca_04504 Cicer arietinum Ca_04504 I 0.692
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.692
Bo01335s010 Brassica oleracea Bo01335s010 I 0.691
Bo8g108050 Brassica oleracea Bo8g108050 I 0.691
Bra016763 Brassica rapa Bra016763 I 0.691
Bra026963 Brassica rapa Bra026963 I 0.691
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.691
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.691
MTR_6g465990 Medicago truncatula MTR_6g465990 N 0.690
30190.m011119 Ricinus communis 30190.m011119 I 0.690
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.690
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.689
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.689
DREB1F Arabidopsis thaliana AT1G12610 D 0.687
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.687
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.687
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.687
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.686
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.684
DREB1G Oryza indica BGIOSGA008804 I 0.684
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.684
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.684
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.684
OBART02G27760 Oryza barthii OBART02G27760 I 0.684
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.684
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.684
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.684
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.684
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.684
DREB1G Oryza sativa OS02G0677300 D 0.684
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.684
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.684
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.684
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.684
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.684
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.684
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.683
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.681
DREB1E Oryza indica BGIOSGA016950 I 0.680
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.680
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.680
OBART04G22220 Oryza barthii OBART04G22220 I 0.680
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.680
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.680
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.680
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.680
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.680
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.680
DREB1E Oryza sativa OS04G0572400 D 0.680
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.680
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.679
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.679
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.679
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.679
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.679
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.677