PGSC0003DMG400014309 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400014309 T004413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.795 0.920
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.795 0.920
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.756 0.840
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.756 0.840
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.756 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.755 0.880
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.755 0.880
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.755 0.880
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.755 0.880
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.725 0.860
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.725 0.860
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.697 0.820
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.697 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.695 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.695 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.695 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.695 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.695 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.695 0.780
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.691 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400037120 AP2 62 113

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.836
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.821
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.798
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.796
DREB1D Arabidopsis thaliana AT5G51990 D 0.795
Bo9g104770 Brassica oleracea Bo9g104770 I 0.795
Bra028290 Brassica rapa Bra028290 I 0.795
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.795
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.795
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.795
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.795
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.795
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.794
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.791
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.791
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.791
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.787
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.785
mgf026642m Mimulus guttatus mgf026642m I 0.785
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.784
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.783
Cla002362 Citrullus lanatus Cla002362 I 0.782
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.781
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.781
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.779
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.778
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.778
PK23332.1 Cannabis sativa PK23332.1 I 0.778
Cla006315 Citrullus lanatus Cla006315 I 0.777
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.769
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.769
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.766
30147.m014313 Ricinus communis 30147.m014313 I 0.765
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.764
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.763
Ca_18948 Cicer arietinum Ca_18948 I 0.760
DREB1C Arabidopsis thaliana AT4G25470 D 0.756
DREB1A Arabidopsis thaliana AT4G25480 D 0.755
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.755
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.755
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.755
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.755
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.755
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.754
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.753
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.753
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.753
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.753
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.751
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.749
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.749
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.749
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.748
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.748
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.748
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.747
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.747
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.747
mgf016974m Mimulus guttatus mgf016974m I 0.747
mgf018631m Mimulus guttatus mgf018631m I 0.747
mgf018934m Mimulus guttatus mgf018934m I 0.747
mgf022408m Mimulus guttatus mgf022408m I 0.747
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.747
30190.m011120 Ricinus communis 30190.m011120 I 0.745
mgf017136m Mimulus guttatus mgf017136m I 0.742
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.742
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.742
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.742
MDP0000154764 Malus domestica MDP0000154764 I 0.742
MDP0000198054 Malus domestica MDP0000198054 I 0.741
Cla011674 Citrullus lanatus Cla011674 I 0.740
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.739
Pm023775 Prunus mume Pm023775 I 0.739
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.739
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.738
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.737
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.736
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.733
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.732
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.732
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.731
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.731
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.731
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.729
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.729
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.729
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.729
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.726
mgf019061m Mimulus guttatus mgf019061m I 0.726
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.726
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.726
Bo7g110320 Brassica oleracea Bo7g110320 I 0.725
Bra019162 Brassica rapa Bra019162 I 0.725
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.725
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.725
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.724
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.724
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.724
Pm023769 Prunus mume Pm023769 I 0.724
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.724
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.724
TCM_016175 Theobroma cacao TCM_016175 I 0.723
Bra022770 Brassica rapa Bra022770 I 0.722
mgf026339m Mimulus guttatus mgf026339m I 0.721
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.720
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.720
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.718
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.718
Pm023772 Prunus mume Pm023772 I 0.716
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.715
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.713
60638.m00016 Ricinus communis 60638.m00016 I 0.712
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.712
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.712
Bo8g050800 Brassica oleracea Bo8g050800 I 0.711
Bra010460 Brassica rapa Bra010460 I 0.711
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.711
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.711
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.710
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.710
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.710
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.709
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.708
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.706
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.706
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.706
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.706
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.706
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.706
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.706
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.706
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.706
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.706
30190.m011119 Ricinus communis 30190.m011119 I 0.705
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.702
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.702
Bo01335s010 Brassica oleracea Bo01335s010 I 0.701
Bra016763 Brassica rapa Bra016763 I 0.701
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.701
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.699
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.699
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.699
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.698
DREB1G Oryza indica BGIOSGA008804 I 0.697
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.697
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.697
OBART02G27760 Oryza barthii OBART02G27760 I 0.697
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.697
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.697
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.697
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.697
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.697
DREB1G Oryza sativa OS02G0677300 D 0.697
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.697
Ca_04504 Cicer arietinum Ca_04504 I 0.697
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.697
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.697
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.697
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.696
DREB1F Arabidopsis thaliana AT1G12610 D 0.695
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.695
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.695
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.695
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.693
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.692
Bo8g108050 Brassica oleracea Bo8g108050 I 0.692
Bra026963 Brassica rapa Bra026963 I 0.692
DREB1E Oryza indica BGIOSGA016950 I 0.691
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.691
OBART04G22220 Oryza barthii OBART04G22220 I 0.691
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.691
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.691
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.691
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.691
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.691
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.691
DREB1E Oryza sativa OS04G0572400 D 0.691
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.689
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.688
Si018262m.g Setaria italica Si018262m.g I 0.687
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.687
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.687
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.686
Pm019386 Prunus mume Pm019386 I 0.686
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.686
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.685
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.684
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.684
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.682
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.681
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.681
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.681
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.680
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.680
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.680
Si011005m.g Setaria italica Si011005m.g I 0.680
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.679
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.678
AMTR_s00111p00051610 Amborella trichopoda AMTR_s00111p00051610 I 0.677