30147.m014313 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 30147.m014313 T006754_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.804 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.804 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.804 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.804 0.940
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.781 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.781 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.768 0.880
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.768 0.880
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.768 0.880
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.840
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.840
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.709 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.709 0.900
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.706 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.706 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.706 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.706 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.706 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.706 0.780
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.696 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.683 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.683 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.678 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30147.m014313 AP2 65 116

Links

Other AP2 family TFs
Other Ricinus communis TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.813
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.813
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.813
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.807
mgf026642m Mimulus guttatus mgf026642m I 0.807
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.806
DREB1A Arabidopsis thaliana AT4G25480 D 0.804
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.803
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.803
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.803
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.803
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.803
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.803
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.801
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.800
PK23332.1 Cannabis sativa PK23332.1 I 0.800
Cla006315 Citrullus lanatus Cla006315 I 0.799
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.797
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.794
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.791
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.791
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.788
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.787
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.785
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.784
DREB1D Arabidopsis thaliana AT5G51990 D 0.781
Bo9g104770 Brassica oleracea Bo9g104770 I 0.781
Bra028290 Brassica rapa Bra028290 I 0.781
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.781
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.781
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.781
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.781
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.781
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.779
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.777
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.777
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.773
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.771
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.770
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.769
DREB1C Arabidopsis thaliana AT4G25470 D 0.768
Cla002362 Citrullus lanatus Cla002362 I 0.768
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.765
mgf017136m Mimulus guttatus mgf017136m I 0.764
MDP0000154764 Malus domestica MDP0000154764 I 0.764
MDP0000198054 Malus domestica MDP0000198054 I 0.763
Cla011674 Citrullus lanatus Cla011674 I 0.762
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.761
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.761
Pm023775 Prunus mume Pm023775 I 0.761
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.760
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.759
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.758
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.757
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.755
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.754
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.754
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.754
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.754
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.753
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.753
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.751
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.751
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.751
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.748
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.748
mgf019061m Mimulus guttatus mgf019061m I 0.748
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.747
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.747
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.747
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.747
DREB1G Oryza indica BGIOSGA008804 I 0.746
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.746
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.746
OBART02G27760 Oryza barthii OBART02G27760 I 0.746
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.746
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.746
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.746
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.746
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.746
DREB1G Oryza sativa OS02G0677300 D 0.746
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.746
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.746
Pm023769 Prunus mume Pm023769 I 0.746
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.746
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.746
TCM_016175 Theobroma cacao TCM_016175 I 0.745
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.741
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.741
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.739
Pm023772 Prunus mume Pm023772 I 0.739
30190.m011120 Ricinus communis 30190.m011120 I 0.738
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.737
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.736
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.736
Si018262m.g Setaria italica Si018262m.g I 0.736
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.736
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.735
60638.m00016 Ricinus communis 60638.m00016 I 0.734
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.734
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.733
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.732
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.730
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.730
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.730
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.729
30190.m011119 Ricinus communis 30190.m011119 I 0.727
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.727
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.727
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.724
mgf026339m Mimulus guttatus mgf026339m I 0.722
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.720
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.720
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.719
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.719
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.718
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.716
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.715
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.714
Bo01335s010 Brassica oleracea Bo01335s010 I 0.713
Bra016763 Brassica rapa Bra016763 I 0.713
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.711
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.711
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.711
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.711
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.711
Bo7g110320 Brassica oleracea Bo7g110320 I 0.709
Bra019162 Brassica rapa Bra019162 I 0.709
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.709
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.709
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.709
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.709
Pm019386 Prunus mume Pm019386 I 0.708
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.707
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.707
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.707
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.707
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.707
DREB1F Arabidopsis thaliana AT1G12610 D 0.706
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.706
Bra022770 Brassica rapa Bra022770 I 0.705
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.704
Bo8g108050 Brassica oleracea Bo8g108050 I 0.703
Bra026963 Brassica rapa Bra026963 I 0.703
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.703
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.703
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.703
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.703
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.703
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.701
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.700
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.699
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.699
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.699
Ca_04504 Cicer arietinum Ca_04504 I 0.698
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.698
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.698
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.697
mgf016974m Mimulus guttatus mgf016974m I 0.697
mgf018631m Mimulus guttatus mgf018631m I 0.697
mgf018934m Mimulus guttatus mgf018934m I 0.697
mgf022408m Mimulus guttatus mgf022408m I 0.697
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.697
DREB1E Oryza indica BGIOSGA016950 I 0.696
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.696
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.696
OBART04G22220 Oryza barthii OBART04G22220 I 0.696
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.696
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.696
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.696
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.696
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.696
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.696
DREB1E Oryza sativa OS04G0572400 D 0.696
Ca_18948 Cicer arietinum Ca_18948 I 0.696
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.696
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.695
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.694
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.693
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.693
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.692
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.690
Bo8g050800 Brassica oleracea Bo8g050800 I 0.688
Bra010460 Brassica rapa Bra010460 I 0.688
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.688
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.686
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.685
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.685
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.685
Si011005m.g Setaria italica Si011005m.g I 0.685
DREB1B Arabidopsis thaliana AT4G25490 D 0.683
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.683
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.681
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.681
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.681
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.680
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.680
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.679
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.678
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.678
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.678