30190.m011120 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 30190.m011120 T006775_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.761 0.840
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.761 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.729 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.729 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.729 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.729 0.800
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.723 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.723 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.723 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.709 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.709 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.709 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.709 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.709 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.709 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.685 0.720
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.685 0.760
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.685 0.760
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.681 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30190.m011120 AP2 57 108

Links

Other AP2 family TFs
Other Ricinus communis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.809
Cla011674 Citrullus lanatus Cla011674 I 0.805
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.804
Pm023775 Prunus mume Pm023775 I 0.804
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.801
MDP0000154764 Malus domestica MDP0000154764 I 0.801
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.798
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.795
MDP0000198054 Malus domestica MDP0000198054 I 0.795
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.794
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.790
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.789
Pm023769 Prunus mume Pm023769 I 0.789
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.785
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.782
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.776
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.776
Pm023772 Prunus mume Pm023772 I 0.770
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.767
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.767
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.765
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.764
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.764
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.764
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.764
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.763
DREB1D Arabidopsis thaliana AT5G51990 D 0.761
Bo9g104770 Brassica oleracea Bo9g104770 I 0.761
Bra028290 Brassica rapa Bra028290 I 0.761
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.761
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.761
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.761
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.761
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.761
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.761
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.760
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.760
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.760
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.759
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.758
mgf026642m Mimulus guttatus mgf026642m I 0.758
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.758
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.758
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.757
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.756
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.756
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.755
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.755
TCM_016175 Theobroma cacao TCM_016175 I 0.754
Cla006315 Citrullus lanatus Cla006315 I 0.754
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.754
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.752
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.752
PK23332.1 Cannabis sativa PK23332.1 I 0.752
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.751
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.750
Cla002362 Citrullus lanatus Cla002362 I 0.749
mgf017136m Mimulus guttatus mgf017136m I 0.749
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.747
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.746
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.746
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.746
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.746
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.745
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.743
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.742
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.742
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.741
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.741
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.739
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.738
30147.m014313 Ricinus communis 30147.m014313 I 0.738
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.738
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.738
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.738
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.738
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.738
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.737
mgf019061m Mimulus guttatus mgf019061m I 0.737
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.735
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.734
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.734
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.733
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.730
DREB1A Arabidopsis thaliana AT4G25480 D 0.729
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.729
60638.m00016 Ricinus communis 60638.m00016 I 0.729
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.729
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.729
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.729
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.729
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.727
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.727
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.726
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.725
30190.m011119 Ricinus communis 30190.m011119 I 0.725
DREB1C Arabidopsis thaliana AT4G25470 D 0.723
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.723
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.723
Ca_08732 Cicer arietinum Ca_08732 I 0.723
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.721
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.720
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.720
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.720
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.719
mgf026339m Mimulus guttatus mgf026339m I 0.716
Bo01335s010 Brassica oleracea Bo01335s010 I 0.715
Bra016763 Brassica rapa Bra016763 I 0.715
Pm023777 Prunus mume Pm023777 N 0.715
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.714
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.714
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.714
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.713
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.712
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.712
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.711
DREB1F Arabidopsis thaliana AT1G12610 D 0.709
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.709
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.709
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.708
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.708
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.707
Bo8g108050 Brassica oleracea Bo8g108050 I 0.706
Bra026963 Brassica rapa Bra026963 I 0.706
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.705
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.705
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.705
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.705
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.703
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.702
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.702
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.702
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.701
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.699
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.698
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.698
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.698
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.698
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.698
Ca_18948 Cicer arietinum Ca_18948 I 0.697
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.696
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.694
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.693
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.692
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.692
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.692
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.690
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.690
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.690
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.689
Bra027612 Brassica rapa Bra027612 I 0.688
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.687
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.687
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.686
DREB1G Oryza indica BGIOSGA008804 I 0.685
DREB1E Oryza indica BGIOSGA016950 I 0.685
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.685
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.685
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.685
OBART02G27760 Oryza barthii OBART02G27760 I 0.685
OBART04G22220 Oryza barthii OBART04G22220 I 0.685
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.685
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.685
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.685
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.685
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.685
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.685
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.685
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.685
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.685
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.685
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.685
DREB1G Oryza sativa OS02G0677300 D 0.685
DREB1E Oryza sativa OS04G0572400 D 0.685
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.685
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.685
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.685
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.684
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.683
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.683
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.683
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.683
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.683
Aquca_028_00229 Aquilegia coerulea Aquca_028_00229 N 0.682
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.682
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.681
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.681
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.681
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.678
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.678
Ca_04504 Cicer arietinum Ca_04504 I 0.677
mgf016974m Mimulus guttatus mgf016974m I 0.677
mgf018631m Mimulus guttatus mgf018631m I 0.677
mgf018934m Mimulus guttatus mgf018934m I 0.677
mgf022408m Mimulus guttatus mgf022408m I 0.677
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.677