Bostr.15774s0346 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.15774s0346 T007581_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.839 1.000
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.839 1.000
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.800 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.800 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.800 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.778 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.778 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.778 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.778 0.940
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.715 0.940
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.715 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.714 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.714 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.701 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.701 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.701 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.701 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.701 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.701 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.700 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.699 0.880
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.699 0.880
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.693 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.678 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.15774s0346.1.p AP2 52 103

Links

Other AP2 family TFs
Other Boechera stricta TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1D Arabidopsis thaliana AT5G51990 D 0.839
Bo9g104770 Brassica oleracea Bo9g104770 I 0.839
Bra028290 Brassica rapa Bra028290 I 0.839
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.839
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.839
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.839
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.839
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.836
Cla002362 Citrullus lanatus Cla002362 I 0.826
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.807
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.807
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.807
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.804
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.804
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.801
mgf026642m Mimulus guttatus mgf026642m I 0.801
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.801
DREB1C Arabidopsis thaliana AT4G25470 D 0.800
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.799
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.798
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.795
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.795
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.795
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.795
PK23332.1 Cannabis sativa PK23332.1 I 0.795
Cla006315 Citrullus lanatus Cla006315 I 0.793
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.789
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.789
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.787
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.786
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.785
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.785
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.782
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.781
30147.m014313 Ricinus communis 30147.m014313 I 0.781
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.779
DREB1A Arabidopsis thaliana AT4G25480 D 0.778
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.778
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.778
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.778
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.778
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.776
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.772
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.772
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.770
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.766
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.764
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.764
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.764
30190.m011120 Ricinus communis 30190.m011120 I 0.761
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.761
MDP0000154764 Malus domestica MDP0000154764 I 0.759
mgf017136m Mimulus guttatus mgf017136m I 0.758
MDP0000198054 Malus domestica MDP0000198054 I 0.757
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.756
Cla011674 Citrullus lanatus Cla011674 I 0.756
Pm023775 Prunus mume Pm023775 I 0.756
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.756
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.755
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.754
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.754
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.753
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.752
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.752
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.752
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.749
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.749
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.748
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.748
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.747
TCM_016175 Theobroma cacao TCM_016175 I 0.746
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.745
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.743
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.743
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.743
mgf019061m Mimulus guttatus mgf019061m I 0.742
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.741
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.741
Pm023769 Prunus mume Pm023769 I 0.741
mgf026339m Mimulus guttatus mgf026339m I 0.741
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.741
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.741
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.740
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.740
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.738
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.736
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.736
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.735
60638.m00016 Ricinus communis 60638.m00016 I 0.734
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.733
Pm023772 Prunus mume Pm023772 I 0.733
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.733
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.732
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.729
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.729
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.727
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.727
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.727
Ca_18948 Cicer arietinum Ca_18948 I 0.727
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.726
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.726
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.726
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.726
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.726
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.725
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.723
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.723
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.723
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.723
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.723
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.723
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.722
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.722
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.722
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.722
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.722
30190.m011119 Ricinus communis 30190.m011119 I 0.721
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.720
mgf016974m Mimulus guttatus mgf016974m I 0.720
mgf018631m Mimulus guttatus mgf018631m I 0.720
mgf018934m Mimulus guttatus mgf018934m I 0.720
mgf022408m Mimulus guttatus mgf022408m I 0.720
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.720
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.720
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.719
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.719
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.719
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.719
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.719
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.716
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.716
DREB1B Arabidopsis thaliana AT4G25490 D 0.715
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.715
DREB1G Oryza indica BGIOSGA008804 I 0.714
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.714
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.714
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.714
OBART02G27760 Oryza barthii OBART02G27760 I 0.714
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.714
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.714
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.714
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.714
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.714
DREB1G Oryza sativa OS02G0677300 D 0.714
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.714
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.714
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.714
Ca_04504 Cicer arietinum Ca_04504 I 0.713
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.713
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.710
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.709
Bo01335s010 Brassica oleracea Bo01335s010 I 0.707
Bra016763 Brassica rapa Bra016763 I 0.707
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.706
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.704
Si018262m.g Setaria italica Si018262m.g I 0.704
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.703
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.703
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.703
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.703
Bra022770 Brassica rapa Bra022770 I 0.702
Pm019386 Prunus mume Pm019386 I 0.702
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.702
DREB1F Arabidopsis thaliana AT1G12610 D 0.701
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.701
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.701
DREB1E Oryza indica BGIOSGA016950 I 0.700
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.700
OBART04G22220 Oryza barthii OBART04G22220 I 0.700
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.700
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.700
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.700
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.700
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.700
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.700
DREB1E Oryza sativa OS04G0572400 D 0.700
Bo7g110320 Brassica oleracea Bo7g110320 I 0.699
Bra019162 Brassica rapa Bra019162 I 0.699
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.699
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.699
Bo8g108050 Brassica oleracea Bo8g108050 I 0.698
Bra026963 Brassica rapa Bra026963 I 0.698
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.698
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.697
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.694
Bo3g024240 Brassica oleracea Bo3g024240 I 0.693
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.693
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.693
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.693
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.693
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.692
Bo8g050800 Brassica oleracea Bo8g050800 I 0.691
Bra010460 Brassica rapa Bra010460 I 0.691
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.691
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.690
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.690
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.690
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.689
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.689
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.689
Si011005m.g Setaria italica Si011005m.g I 0.689
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.688
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.687
Ca_08732 Cicer arietinum Ca_08732 I 0.686
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.685
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.684
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.683
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.682
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.679
VIT_08s0007g03790 Vitis vinifera VIT_08s0007g03790 I 0.679
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.678
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.678
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.678
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.678