Solyc01g009440.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc01g009440.1 T005396_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.705 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.705 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.705 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.705 0.840
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.691 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.691 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.691 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.690 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.690 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.682 0.700
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.682 0.700
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.682 0.700
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.682 0.700
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.682 0.700
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.682 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g009440.1.1 AP2 52 103

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.777
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.766
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.759
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.753
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.753
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.738
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.738
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.738
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.738
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.738
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.738
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.738
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.738
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.728
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.727
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.725
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.725
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.725
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.724
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.721
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.717
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.717
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.713
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.711
60638.m00016 Ricinus communis 60638.m00016 I 0.710
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.708
DREB1A Arabidopsis thaliana AT4G25480 D 0.705
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.705
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.703
Cla011674 Citrullus lanatus Cla011674 I 0.703
mgf026642m Mimulus guttatus mgf026642m I 0.702
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.701
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.700
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.700
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.699
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.698
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.698
mgf026339m Mimulus guttatus mgf026339m I 0.698
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.697
30147.m014313 Ricinus communis 30147.m014313 I 0.697
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.696
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.696
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.696
30190.m011119 Ricinus communis 30190.m011119 I 0.695
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.695
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.695
PK23332.1 Cannabis sativa PK23332.1 I 0.695
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.694
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.694
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.694
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.694
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.693
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.693
DREB1C Arabidopsis thaliana AT4G25470 D 0.691
Cla002362 Citrullus lanatus Cla002362 I 0.691
DREB1D Arabidopsis thaliana AT5G51990 D 0.690
Bo9g104770 Brassica oleracea Bo9g104770 I 0.690
Bra028290 Brassica rapa Bra028290 I 0.690
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.690
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.690
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.690
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.690
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.690
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.690
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.690
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.690
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.690
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.690
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.690
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.689
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.688
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.688
Pm023775 Prunus mume Pm023775 I 0.688
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.688
Bo01335s010 Brassica oleracea Bo01335s010 I 0.687
Bra016763 Brassica rapa Bra016763 I 0.687
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.687
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.687
MDP0000154764 Malus domestica MDP0000154764 I 0.687
Cla006315 Citrullus lanatus Cla006315 I 0.686
30190.m011120 Ricinus communis 30190.m011120 I 0.686
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.686
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.685
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.685
TCM_016175 Theobroma cacao TCM_016175 I 0.685
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.685
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.685
MDP0000198054 Malus domestica MDP0000198054 I 0.684
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.683
DREB1F Arabidopsis thaliana AT1G12610 D 0.682
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.682
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.682
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.682
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.682
Bo8g108050 Brassica oleracea Bo8g108050 I 0.680
Bra026963 Brassica rapa Bra026963 I 0.680
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.679
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.678