PGSC0003DMG400038366 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400038366 T004502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.719 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.719 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.719 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.719 0.860
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.693 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.693 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.693 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.693 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.693 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.693 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.683 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.683 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.683 0.820
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.678 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.678 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.678 0.820
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.678 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400088795 AP2 53 104

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.777
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.748
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.738
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.738
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.738
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.738
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.734
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.727
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.722
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.721
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.721
60638.m00016 Ricinus communis 60638.m00016 I 0.721
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.720
DREB1A Arabidopsis thaliana AT4G25480 D 0.719
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.716
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.715
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.713
Cla011674 Citrullus lanatus Cla011674 I 0.713
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.713
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.712
mgf026642m Mimulus guttatus mgf026642m I 0.712
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.711
30147.m014313 Ricinus communis 30147.m014313 I 0.711
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.706
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.706
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.706
30190.m011119 Ricinus communis 30190.m011119 I 0.706
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.706
PK23332.1 Cannabis sativa PK23332.1 I 0.706
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.706
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.706
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.706
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.705
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.705
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.705
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.704
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.704
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.704
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.704
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.704
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.704
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.704
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.701
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.701
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.701
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.699
Pm023775 Prunus mume Pm023775 I 0.698
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.698
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.698
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.698
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.697
Bra016763 Brassica rapa Bra016763 I 0.697
MDP0000154764 Malus domestica MDP0000154764 I 0.697
Bo01335s010 Brassica oleracea Bo01335s010 I 0.697
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.696
TCM_016175 Theobroma cacao TCM_016175 I 0.696
Cla006315 Citrullus lanatus Cla006315 I 0.696
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.695
MDP0000198054 Malus domestica MDP0000198054 I 0.694
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.693
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.693
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.693
DREB1F Arabidopsis thaliana AT1G12610 D 0.693
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.692
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.692
Bra026963 Brassica rapa Bra026963 I 0.690
Bo8g108050 Brassica oleracea Bo8g108050 I 0.690
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.690
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.689
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.688
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.688
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.687
mgf017136m Mimulus guttatus mgf017136m I 0.686
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.685
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.685
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.685
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.684
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.683
DREB1C Arabidopsis thaliana AT4G25470 D 0.683
Pm023769 Prunus mume Pm023769 I 0.683
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.682
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.682
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.682
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.682
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.682
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.682
Bra022770 Brassica rapa Bra022770 I 0.681
Cla002362 Citrullus lanatus Cla002362 I 0.680
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.680
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.679
DREB1D Arabidopsis thaliana AT5G51990 D 0.678
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.678
Bra028290 Brassica rapa Bra028290 I 0.678
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.678
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.678
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.678
Bo7g110320 Brassica oleracea Bo7g110320 I 0.678
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.678
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.678
Bra019162 Brassica rapa Bra019162 I 0.678
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.678
Bo9g104770 Brassica oleracea Bo9g104770 I 0.678