Bostr.7867s0361 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.7867s0361 T007667_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.820 0.960
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.820 0.960
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.820 0.960
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.820 0.960
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.798 0.940
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.798 0.940
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.798 0.940
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.778 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.778 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.709 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.709 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.699 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.699 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.699 0.920
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.697 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.697 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.697 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.697 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.697 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.697 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.7867s0361.1.p AP2 40 91

Links

Other AP2 family TFs
Other Boechera stricta TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.833
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.833
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.833
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.826
DREB1A Arabidopsis thaliana AT4G25480 D 0.820
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.813
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.813
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.810
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.805
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.804
PK23332.1 Cannabis sativa PK23332.1 I 0.804
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.803
30147.m014313 Ricinus communis 30147.m014313 I 0.803
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.803
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.803
Cla006315 Citrullus lanatus Cla006315 I 0.802
DREB1C Arabidopsis thaliana AT4G25470 D 0.798
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.797
mgf026642m Mimulus guttatus mgf026642m I 0.797
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.794
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.791
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.782
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.782
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.781
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.780
DREB1D Arabidopsis thaliana AT5G51990 D 0.778
Bo9g104770 Brassica oleracea Bo9g104770 I 0.778
Bra028290 Brassica rapa Bra028290 I 0.778
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.778
Cla002362 Citrullus lanatus Cla002362 I 0.778
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.778
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.778
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.778
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.778
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.777
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.775
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.774
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.773
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.768
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.762
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.761
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.760
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.760
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.758
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.757
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.757
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.755
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.755
MDP0000154764 Malus domestica MDP0000154764 I 0.755
mgf017136m Mimulus guttatus mgf017136m I 0.754
MDP0000198054 Malus domestica MDP0000198054 I 0.753
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.752
Cla011674 Citrullus lanatus Cla011674 I 0.752
Pm023775 Prunus mume Pm023775 I 0.752
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.751
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.751
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.751
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.751
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.751
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.751
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.750
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.750
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.750
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.750
DREB1G Oryza indica BGIOSGA008804 I 0.746
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.746
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.746
OBART02G27760 Oryza barthii OBART02G27760 I 0.746
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.746
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.746
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.746
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.746
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.746
DREB1G Oryza sativa OS02G0677300 D 0.746
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.746
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.746
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.746
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.745
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.744
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.744
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.744
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.743
TCM_016175 Theobroma cacao TCM_016175 I 0.742
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.741
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.739
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.738
mgf019061m Mimulus guttatus mgf019061m I 0.738
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.737
Pm023769 Prunus mume Pm023769 I 0.737
Si018262m.g Setaria italica Si018262m.g I 0.736
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.736
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.734
60638.m00016 Ricinus communis 60638.m00016 I 0.730
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.729
Pm023772 Prunus mume Pm023772 I 0.729
30190.m011120 Ricinus communis 30190.m011120 I 0.729
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.728
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.728
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.728
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.726
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.726
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.726
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.726
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.725
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.723
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.723
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.723
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.723
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.718
30190.m011119 Ricinus communis 30190.m011119 I 0.717
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.717
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.717
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.716
mgf026339m Mimulus guttatus mgf026339m I 0.716
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.715
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.714
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.714
Bra022770 Brassica rapa Bra022770 I 0.712
Pm019386 Prunus mume Pm019386 I 0.711
Bo7g110320 Brassica oleracea Bo7g110320 I 0.709
Bra019162 Brassica rapa Bra019162 I 0.709
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.709
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.709
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.709
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.709
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.706
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.705
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.704
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.704
Bo01335s010 Brassica oleracea Bo01335s010 I 0.703
Bra016763 Brassica rapa Bra016763 I 0.703
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.703
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.702
Ca_04504 Cicer arietinum Ca_04504 I 0.701
Bo8g108050 Brassica oleracea Bo8g108050 I 0.700
Bra026963 Brassica rapa Bra026963 I 0.700
DREB1B Arabidopsis thaliana AT4G25490 D 0.699
DREB1E Oryza indica BGIOSGA016950 I 0.699
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.699
OBART04G22220 Oryza barthii OBART04G22220 I 0.699
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.699
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.699
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.699
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.699
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.699
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.699
DREB1E Oryza sativa OS04G0572400 D 0.699
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.699
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.699
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.698
DREB1F Arabidopsis thaliana AT1G12610 D 0.697
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.697
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.697
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.697
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.697
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.697
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.697
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.697
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.695
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.694
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.693
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.693
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.693
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.693
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.693
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.693
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.692
Bo8g050800 Brassica oleracea Bo8g050800 I 0.691
Bra010460 Brassica rapa Bra010460 I 0.691
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.691
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.691
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.691
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.690
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.690
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.689
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.689
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.689
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.688
Ca_18948 Cicer arietinum Ca_18948 I 0.687
mgf016974m Mimulus guttatus mgf016974m I 0.687
mgf018631m Mimulus guttatus mgf018631m I 0.687
mgf018934m Mimulus guttatus mgf018934m I 0.687
mgf022408m Mimulus guttatus mgf022408m I 0.687
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.687
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.686
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.685
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.685
Si011005m.g Setaria italica Si011005m.g I 0.685
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.684
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.683
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.683
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.683
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.683
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.682
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.682