orange1.1g026103m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g026103m.g T009229_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.722 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.722 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.698 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.698 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.698 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.698 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.698 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.698 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.697 0.800
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.697 0.800
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.697 0.800
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.697 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.697 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.697 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.697 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g026103m AP2 65 116

Links

Other AP2 family TFs
Other Citrus sinensis TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.809
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.808
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.771
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.767
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.766
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.763
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.756
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.756
Cla011674 Citrullus lanatus Cla011674 I 0.755
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.753
MDP0000198054 Malus domestica MDP0000198054 I 0.750
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.749
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.748
30190.m011120 Ricinus communis 30190.m011120 I 0.746
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.741
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.740
Pm023775 Prunus mume Pm023775 I 0.740
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.738
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.737
MDP0000154764 Malus domestica MDP0000154764 I 0.737
mgf017136m Mimulus guttatus mgf017136m I 0.736
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.734
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.733
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.733
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.729
Pm023772 Prunus mume Pm023772 I 0.729
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.725
Pm023769 Prunus mume Pm023769 I 0.725
Cla002362 Citrullus lanatus Cla002362 I 0.724
mgf019061m Mimulus guttatus mgf019061m I 0.724
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.724
DREB1D Arabidopsis thaliana AT5G51990 D 0.722
Bo9g104770 Brassica oleracea Bo9g104770 I 0.722
Bra028290 Brassica rapa Bra028290 I 0.722
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.722
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.722
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.722
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.722
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.722
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.722
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.722
mgf026642m Mimulus guttatus mgf026642m I 0.720
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.719
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.718
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.718
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.718
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.716
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.715
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.715
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.715
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.713
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.713
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.713
PK23332.1 Cannabis sativa PK23332.1 I 0.713
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.712
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.712
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.712
TCM_016175 Theobroma cacao TCM_016175 I 0.710
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.708
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.708
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.708
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.707
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.706
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.706
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.705
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.705
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.704
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.703
Bo01335s010 Brassica oleracea Bo01335s010 I 0.702
Bra016763 Brassica rapa Bra016763 I 0.702
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.702
Ca_08732 Cicer arietinum Ca_08732 I 0.702
Ca_18948 Cicer arietinum Ca_18948 I 0.702
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.702
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.701
Cla006315 Citrullus lanatus Cla006315 I 0.701
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.701
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.701
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.701
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.701
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.700
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.700
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.700
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.700
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.700
DREB1F Arabidopsis thaliana AT1G12610 D 0.698
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.698
DREB1C Arabidopsis thaliana AT4G25470 D 0.697
DREB1A Arabidopsis thaliana AT4G25480 D 0.697
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.697
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.696
Bo8g108050 Brassica oleracea Bo8g108050 I 0.695
Bra026963 Brassica rapa Bra026963 I 0.695
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.694
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.692
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.691
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.690
60638.m00016 Ricinus communis 60638.m00016 I 0.690
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.690
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.690
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.690
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.688
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.687
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.687
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.687
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.687
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.687
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.687
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.687
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.687
30147.m014313 Ricinus communis 30147.m014313 I 0.686
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.684
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.684
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.682
mgf016974m Mimulus guttatus mgf016974m I 0.682
mgf018631m Mimulus guttatus mgf018631m I 0.682
mgf018934m Mimulus guttatus mgf018934m I 0.682
mgf022408m Mimulus guttatus mgf022408m I 0.682
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.682
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.682
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.682
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.682
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.681
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.680
30190.m011119 Ricinus communis 30190.m011119 I 0.680