PGSC0003DMG400012524 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400012524 T004393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.734 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.734 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.734 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.734 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.734 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.734 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.734 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.734 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.734 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.734 0.800
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.712 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.704 0.780
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.704 0.780
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.699 0.720
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.699 0.720
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.698 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.698 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.698 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032621 AP2 49 100

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.834
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.817
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.777
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.772
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.765
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.763
mgf019061m Mimulus guttatus mgf019061m I 0.760
Cla011674 Citrullus lanatus Cla011674 I 0.757
mgf017136m Mimulus guttatus mgf017136m I 0.755
MDP0000198054 Malus domestica MDP0000198054 I 0.754
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.752
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.752
Pm023775 Prunus mume Pm023775 I 0.752
MDP0000154764 Malus domestica MDP0000154764 I 0.752
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.750
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.750
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.747
Pm023769 Prunus mume Pm023769 I 0.747
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.746
Pm023772 Prunus mume Pm023772 I 0.744
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.740
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.737
Bo01335s010 Brassica oleracea Bo01335s010 I 0.736
Bra016763 Brassica rapa Bra016763 I 0.736
30147.m014313 Ricinus communis 30147.m014313 I 0.736
DREB1F Arabidopsis thaliana AT1G12610 D 0.734
DREB1A Arabidopsis thaliana AT4G25480 D 0.734
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.734
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.734
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.733
Bo8g108050 Brassica oleracea Bo8g108050 I 0.731
Bra026963 Brassica rapa Bra026963 I 0.731
PGSC0003DMG400012526 Solanum tuberosum PGSC0003DMG400012526 I 0.731
30190.m011120 Ricinus communis 30190.m011120 I 0.730
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.729
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.729
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.729
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.729
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.729
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.729
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.729
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.729
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.728
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.728
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.727
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.727
mgf026642m Mimulus guttatus mgf026642m I 0.727
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.727
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.727
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.727
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.726
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.726
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.726
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.724
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.723
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.723
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.723
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.723
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.721
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.721
PK23332.1 Cannabis sativa PK23332.1 I 0.721
Cla006315 Citrullus lanatus Cla006315 I 0.720
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.720
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.720
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.717
Solyc12g056430.1 Solanum lycopersicum Solyc12g056430.1 I 0.715
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.714
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.713
TCM_016175 Theobroma cacao TCM_016175 I 0.713
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.713
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.712
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.712
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.712
60638.m00016 Ricinus communis 60638.m00016 I 0.709
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.708
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.708
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.708
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.708
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.708
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.707
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.707
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.707
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.705
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.705
DREB1D Arabidopsis thaliana AT5G51990 D 0.704
Bo9g104770 Brassica oleracea Bo9g104770 I 0.704
Bra028290 Brassica rapa Bra028290 I 0.704
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.704
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.704
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.704
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.704
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.704
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.704
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.704
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.704
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.703
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.701
DREB1G Oryza indica BGIOSGA008804 I 0.699
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.699
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.699
OBART02G27760 Oryza barthii OBART02G27760 I 0.699
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.699
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.699
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.699
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.699
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.699
DREB1G Oryza sativa OS02G0677300 D 0.699
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.699
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.699
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.699
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.699
DREB1C Arabidopsis thaliana AT4G25470 D 0.698
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.696
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.696
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.695
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.695
Ca_08732 Cicer arietinum Ca_08732 I 0.695
Cla002362 Citrullus lanatus Cla002362 I 0.695
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.694
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.694
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.694
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.693
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.693
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.693
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.693
Bra019777 Brassica rapa Bra019777 I 0.692
Bo5g016750 Brassica oleracea Bo5g016750 I 0.691
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.690
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.690
Si018262m.g Setaria italica Si018262m.g I 0.689
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.684
30190.m011119 Ricinus communis 30190.m011119 I 0.684
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.684
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.684
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.682
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.681
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.679
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.679
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.678
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.678
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.678
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.678
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.678
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.678
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.677