MTR_5g010930 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_5g010930 T002884_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.698 0.660
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.688 0.698
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.688 0.698
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.685 0.679
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.685 0.679
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.685 0.679
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.685 0.679
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES94115 AP2 47 104

Links

Other AP2 family TFs
Other Medicago truncatula TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.777
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.773
Ca_08732 Cicer arietinum Ca_08732 I 0.771
30190.m011119 Ricinus communis 30190.m011119 I 0.766
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.765
Pm023772 Prunus mume Pm023772 I 0.761
MDP0000198054 Malus domestica MDP0000198054 I 0.758
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.756
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.755
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.753
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.752
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.750
Cla011674 Citrullus lanatus Cla011674 I 0.749
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.748
Pm023775 Prunus mume Pm023775 I 0.748
MDP0000154764 Malus domestica MDP0000154764 I 0.745
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.743
Pm023769 Prunus mume Pm023769 I 0.743
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.742
MTR_5g010910 Medicago truncatula MTR_5g010910 N 0.741
MTR_5g010940 Medicago truncatula MTR_5g010940 N 0.741
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.735
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.734
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.730
Ca_03665 Cicer arietinum Ca_03665 N 0.729
Ca_02407 Cicer arietinum Ca_02407 N 0.728
30190.m011120 Ricinus communis 30190.m011120 I 0.725
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.725
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.724
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.723
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.721
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.720
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.720
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.720
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.714
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.714
mgf026642m Mimulus guttatus mgf026642m I 0.714
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.713
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.711
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.710
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.710
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.709
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.709
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.709
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.709
Cla006315 Citrullus lanatus Cla006315 I 0.709
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.709
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.708
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.708
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.707
PK23332.1 Cannabis sativa PK23332.1 I 0.707
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.705
60638.m00016 Ricinus communis 60638.m00016 I 0.702
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.701
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.699
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.699
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.698
TCM_016175 Theobroma cacao TCM_016175 I 0.698
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.698
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.698
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.698
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.698
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.697
LjSGA_077560.1 Lotus japonicus LjSGA_077560.1 N 0.696
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.695
30147.m014313 Ricinus communis 30147.m014313 I 0.694
mgf017136m Mimulus guttatus mgf017136m I 0.693
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.691
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.691
mgf019061m Mimulus guttatus mgf019061m I 0.691
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.689
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.689
DREB1D Arabidopsis thaliana AT5G51990 D 0.688
Bo9g104770 Brassica oleracea Bo9g104770 I 0.688
Bra028290 Brassica rapa Bra028290 I 0.688
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.688
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.688
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.688
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.688
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.688
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.687
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.687
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.686
DREB1A Arabidopsis thaliana AT4G25480 D 0.685
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.685
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.685
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.685
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.685
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.685
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.685
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.685
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.684
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.684
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.684
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.684
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.684
Bo5g016750 Brassica oleracea Bo5g016750 I 0.683
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.683
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.683
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.683
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.683
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.683
Bra019777 Brassica rapa Bra019777 I 0.682
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.682
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.681
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.680
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.679
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.679
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.678
Bo01335s010 Brassica oleracea Bo01335s010 I 0.677
Bra016763 Brassica rapa Bra016763 I 0.677