cassava18935.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava18935.valid.m1 T006826_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.836 0.980
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.836 0.980
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.797 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.797 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.797 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.775 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.775 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.775 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.775 0.920
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.717 0.820
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.717 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.711 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.711 0.920
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.704 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.704 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.704 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.704 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.704 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.704 0.780
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.703 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.689 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18935.valid.m1 AP2 55 106

Links

Other AP2 family TFs
Other Manihot esculenta TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1D Arabidopsis thaliana AT5G51990 D 0.836
Bo9g104770 Brassica oleracea Bo9g104770 I 0.836
Bra028290 Brassica rapa Bra028290 I 0.836
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.836
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.836
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.836
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.836
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.836
Cla002362 Citrullus lanatus Cla002362 I 0.823
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.810
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.810
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.810
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.804
mgf026642m Mimulus guttatus mgf026642m I 0.804
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.804
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.801
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.801
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.799
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.798
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.798
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.798
PK23332.1 Cannabis sativa PK23332.1 I 0.798
DREB1C Arabidopsis thaliana AT4G25470 D 0.797
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.796
Cla006315 Citrullus lanatus Cla006315 I 0.796
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.795
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.792
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.792
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.791
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.789
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.788
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.788
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.785
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.784
30147.m014313 Ricinus communis 30147.m014313 I 0.784
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.782
DREB1A Arabidopsis thaliana AT4G25480 D 0.775
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.775
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.774
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.774
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.774
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.774
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.773
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.773
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.769
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.768
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.767
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.767
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.767
30190.m011120 Ricinus communis 30190.m011120 I 0.764
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.763
MDP0000154764 Malus domestica MDP0000154764 I 0.762
mgf017136m Mimulus guttatus mgf017136m I 0.761
MDP0000198054 Malus domestica MDP0000198054 I 0.761
Cla011674 Citrullus lanatus Cla011674 I 0.760
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.759
Pm023775 Prunus mume Pm023775 I 0.759
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.758
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.758
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.757
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.755
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.753
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.753
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.752
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.751
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.751
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.751
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.750
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.750
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.749
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.749
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.748
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.746
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.746
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.746
mgf019061m Mimulus guttatus mgf019061m I 0.745
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.744
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.744
Pm023769 Prunus mume Pm023769 I 0.744
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.744
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.744
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.743
TCM_016175 Theobroma cacao TCM_016175 I 0.743
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.743
mgf026339m Mimulus guttatus mgf026339m I 0.741
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.741
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.739
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.739
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.738
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.736
Pm023772 Prunus mume Pm023772 I 0.736
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.736
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.735
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.733
60638.m00016 Ricinus communis 60638.m00016 I 0.731
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.730
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.730
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.730
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.730
Ca_18948 Cicer arietinum Ca_18948 I 0.730
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.729
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.729
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.729
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.729
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.728
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.726
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.726
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.726
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.726
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.726
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.726
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.726
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.726
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.725
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.725
30190.m011119 Ricinus communis 30190.m011119 I 0.725
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.725
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.725
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.723
mgf016974m Mimulus guttatus mgf016974m I 0.723
mgf018631m Mimulus guttatus mgf018631m I 0.723
mgf018934m Mimulus guttatus mgf018934m I 0.723
mgf022408m Mimulus guttatus mgf022408m I 0.723
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.723
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.723
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.723
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.722
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.722
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.722
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.719
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.719
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.719
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.719
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.718
DREB1G Oryza indica BGIOSGA008804 I 0.717
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.717
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.717
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.717
OBART02G27760 Oryza barthii OBART02G27760 I 0.717
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.717
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.717
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.717
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.717
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.717
DREB1G Oryza sativa OS02G0677300 D 0.717
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.717
Ca_04504 Cicer arietinum Ca_04504 I 0.717
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.717
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.717
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.716
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.713
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.712
DREB1B Arabidopsis thaliana AT4G25490 D 0.711
Bo01335s010 Brassica oleracea Bo01335s010 I 0.710
Bra016763 Brassica rapa Bra016763 I 0.710
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.709
Si018262m.g Setaria italica Si018262m.g I 0.707
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.707
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.706
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.706
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.706
Pm019386 Prunus mume Pm019386 I 0.705
DREB1F Arabidopsis thaliana AT1G12610 D 0.704
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.704
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.704
DREB1E Oryza indica BGIOSGA016950 I 0.703
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.703
OBART04G22220 Oryza barthii OBART04G22220 I 0.703
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.703
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.703
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.703
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.703
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.703
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.703
DREB1E Oryza sativa OS04G0572400 D 0.703
Bo7g110320 Brassica oleracea Bo7g110320 I 0.702
Bra019162 Brassica rapa Bra019162 I 0.702
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.702
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.702
Bo8g108050 Brassica oleracea Bo8g108050 I 0.701
Bra026963 Brassica rapa Bra026963 I 0.701
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.701
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.700
Bra022770 Brassica rapa Bra022770 I 0.699
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.699
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.696
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.696
Carubv10006809m.g Capsella rubella Carubv10006809m.g I 0.695
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.695
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.693
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.692
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.692
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.692
Si011005m.g Setaria italica Si011005m.g I 0.692
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.691
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.691
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.690
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.690
Bo3g024240 Brassica oleracea Bo3g024240 I 0.689
Ca_08732 Cicer arietinum Ca_08732 I 0.689
Q8S2T5_BRANA Brassica napus Q8S2T5_BRANA D 0.689
Bo8g050800 Brassica oleracea Bo8g050800 I 0.688
Bra010460 Brassica rapa Bra010460 I 0.688
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.688
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.688
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.687
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.686
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.686
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.685
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.683
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.681
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.679