MTR_6g465850 (Medicago truncatula)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 MTR_6g465850 T002919_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.710 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.710 0.800
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.686 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.686 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.686 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.685 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.685 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.685 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.685 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH26604 AP2 61 112

Links

Other AP2 family TFs
Other Medicago truncatula TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.773
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.773
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.773
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.769
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.754
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.745
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.743
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.735
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.735
30190.m011120 Ricinus communis 30190.m011120 I 0.726
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.724
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.721
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.721
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.715
mgf026642m Mimulus guttatus mgf026642m I 0.714
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.713
Cla011674 Citrullus lanatus Cla011674 I 0.713
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.713
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.713
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.713
Cla002362 Citrullus lanatus Cla002362 I 0.712
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.711
DREB1D Arabidopsis thaliana AT5G51990 D 0.710
Bo9g104770 Brassica oleracea Bo9g104770 I 0.710
Bra028290 Brassica rapa Bra028290 I 0.710
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.710
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.710
TCM_016175 Theobroma cacao TCM_016175 I 0.710
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.710
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.710
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.710
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.710
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.710
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.708
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.708
PK23332.1 Cannabis sativa PK23332.1 I 0.708
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.706
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.706
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.706
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.706
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.706
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.702
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.702
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.702
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.701
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.700
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.700
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.699
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.698
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.698
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.698
Cla006315 Citrullus lanatus Cla006315 I 0.698
Pm023775 Prunus mume Pm023775 I 0.698
MDP0000154764 Malus domestica MDP0000154764 I 0.698
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.697
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.696
mgf026339m Mimulus guttatus mgf026339m I 0.696
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.696
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.696
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.696
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.695
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.695
mgf017136m Mimulus guttatus mgf017136m I 0.693
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.692
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.692
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.691
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.690
MDP0000198054 Malus domestica MDP0000198054 I 0.689
Ca_18948 Cicer arietinum Ca_18948 I 0.688
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.687
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.687
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.687
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.687
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.687
DREB1C Arabidopsis thaliana AT4G25470 D 0.686
DREB1A Arabidopsis thaliana AT4G25480 D 0.685
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.684
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.684
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.683
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.683
Pm023769 Prunus mume Pm023769 I 0.683
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.682
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.681
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.681
30147.m014313 Ricinus communis 30147.m014313 I 0.680
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.679
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.678
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.678
Pm023777 Prunus mume Pm023777 N 0.678