PGSC0003DMG400014311 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400014311 T004415_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.787 0.920
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.787 0.920
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.776 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.776 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.776 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.762 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.762 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.762 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.762 0.920
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.731 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.731 0.900
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.694 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.694 0.800
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.691 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.683 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.683 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.683 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.683 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.683 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.683 0.760
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.677 0.900
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.677 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400037122 AP2 60 111

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.821
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.818
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.816
Cla002362 Citrullus lanatus Cla002362 I 0.802
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.798
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.798
PK23332.1 Cannabis sativa PK23332.1 I 0.798
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.793
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.791
mgf026642m Mimulus guttatus mgf026642m I 0.791
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.790
DREB1D Arabidopsis thaliana AT5G51990 D 0.787
Bo9g104770 Brassica oleracea Bo9g104770 I 0.787
Bra028290 Brassica rapa Bra028290 I 0.787
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.787
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.787
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.787
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.787
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.787
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.787
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.787
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.787
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.785
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.785
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.783
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.783
Cla006315 Citrullus lanatus Cla006315 I 0.783
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.783
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.783
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.777
DREB1C Arabidopsis thaliana AT4G25470 D 0.776
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.775
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.769
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.769
DREB1A Arabidopsis thaliana AT4G25480 D 0.762
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.762
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.761
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.761
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.761
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.761
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.761
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.760
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.758
30147.m014313 Ricinus communis 30147.m014313 I 0.757
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.756
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.756
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.755
Ca_18948 Cicer arietinum Ca_18948 I 0.753
mgf016974m Mimulus guttatus mgf016974m I 0.753
mgf018631m Mimulus guttatus mgf018631m I 0.753
mgf018934m Mimulus guttatus mgf018934m I 0.753
mgf022408m Mimulus guttatus mgf022408m I 0.753
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.748
Cla011674 Citrullus lanatus Cla011674 I 0.747
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.745
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.745
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.745
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.745
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.745
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.745
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.741
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.740
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.740
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.740
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.739
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.739
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.738
mgf017136m Mimulus guttatus mgf017136m I 0.738
30190.m011120 Ricinus communis 30190.m011120 I 0.737
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.735
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.735
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.735
MDP0000154764 Malus domestica MDP0000154764 I 0.735
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.734
MDP0000198054 Malus domestica MDP0000198054 I 0.734
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.733
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.732
Pm023775 Prunus mume Pm023775 I 0.732
Bo7g110320 Brassica oleracea Bo7g110320 I 0.731
Bra019162 Brassica rapa Bra019162 I 0.731
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.731
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.731
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.731
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.731
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.730
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.730
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.730
TCM_016175 Theobroma cacao TCM_016175 I 0.730
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.730
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.730
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.730
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.730
Bra022770 Brassica rapa Bra022770 I 0.728
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.725
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.724
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.724
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.724
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.722
mgf019061m Mimulus guttatus mgf019061m I 0.722
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.722
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.722
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.721
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.721
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.719
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.719
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.719
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.717
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.717
Ca_04504 Cicer arietinum Ca_04504 I 0.717
Pm023769 Prunus mume Pm023769 I 0.717
mgf026339m Mimulus guttatus mgf026339m I 0.714
Pm023772 Prunus mume Pm023772 I 0.713
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.713
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.713
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.713
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.713
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.713
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.713
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.711
Eucgr.A02825 Eucalyptus grandis Eucgr.A02825 I 0.711
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.710
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.710
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.708
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.708
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.707
Pm019386 Prunus mume Pm019386 I 0.706
Bo8g050800 Brassica oleracea Bo8g050800 I 0.704
Bra010460 Brassica rapa Bra010460 I 0.704
60638.m00016 Ricinus communis 60638.m00016 I 0.704
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.704
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.704
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.703
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.702
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.702
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.701
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.699
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.699
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.698
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.698
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.698
30190.m011119 Ricinus communis 30190.m011119 I 0.698
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.698
DREB1G Oryza indica BGIOSGA008804 I 0.694
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.694
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.694
OBART02G27760 Oryza barthii OBART02G27760 I 0.694
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.694
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.694
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.694
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.694
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.694
DREB1G Oryza sativa OS02G0677300 D 0.694
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.694
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.694
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.694
DREB1E Oryza indica BGIOSGA016950 I 0.691
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.691
OBART04G22220 Oryza barthii OBART04G22220 I 0.691
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.691
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.691
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.691
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.691
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.691
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.691
DREB1E Oryza sativa OS04G0572400 D 0.691
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.691
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.691
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.689
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.688
Bo01335s010 Brassica oleracea Bo01335s010 I 0.687
Bo8g108050 Brassica oleracea Bo8g108050 I 0.687
Bra016763 Brassica rapa Bra016763 I 0.687
Bra026963 Brassica rapa Bra026963 I 0.687
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.687
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.686
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.686
Si018262m.g Setaria italica Si018262m.g I 0.684
DREB1F Arabidopsis thaliana AT1G12610 D 0.683
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.683
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.682
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.681
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.681
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.679
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.679
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.678
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.678
chr2.CM0304.640.nd Lotus japonicus chr2.CM0304.640.nd I 0.678
DREB1B Arabidopsis thaliana AT4G25490 D 0.677
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.677
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.677