Lus10031657.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10031657.g T008883_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.756 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.756 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.717 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.717 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.717 0.860
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.695 0.880
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.695 0.880
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.695 0.880
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.695 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031657 AP2 48 99

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.817
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.760
DREB1D Arabidopsis thaliana AT5G51990 D 0.756
Bo9g104770 Brassica oleracea Bo9g104770 I 0.756
Bra028290 Brassica rapa Bra028290 I 0.756
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.756
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.756
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.756
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.756
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.756
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.753
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.753
Cla002362 Citrullus lanatus Cla002362 I 0.743
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.726
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.724
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.724
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.724
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.721
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.721
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.720
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.718
mgf026642m Mimulus guttatus mgf026642m I 0.718
DREB1C Arabidopsis thaliana AT4G25470 D 0.717
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.717
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.716
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.715
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.715
Cla006315 Citrullus lanatus Cla006315 I 0.713
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.712
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.712
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.712
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.711
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.711
PK23332.1 Cannabis sativa PK23332.1 I 0.711
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.710
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.709
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.708
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.708
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.708
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.706
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.706
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.706
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.706
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.704
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.703
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.703
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.702
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.702
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.701
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.699
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.699
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.698
30147.m014313 Ricinus communis 30147.m014313 I 0.698
30190.m011120 Ricinus communis 30190.m011120 I 0.698
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.698
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.697
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.697
DREB1A Arabidopsis thaliana AT4G25480 D 0.695
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.694
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.694
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.694
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.694
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.694
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.694
MDP0000198054 Malus domestica MDP0000198054 I 0.694
Cla011674 Citrullus lanatus Cla011674 I 0.693
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.693
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.692
Pm023775 Prunus mume Pm023775 I 0.692
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.691
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.691
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.691
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.691
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.690
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.689
MDP0000154764 Malus domestica MDP0000154764 I 0.689
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.688
mgf026339m Mimulus guttatus mgf026339m I 0.688
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.687
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.686
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.685
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.684
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.684
Ca_04504 Cicer arietinum Ca_04504 I 0.684
mgf016974m Mimulus guttatus mgf016974m I 0.684
mgf018631m Mimulus guttatus mgf018631m I 0.684
mgf018934m Mimulus guttatus mgf018934m I 0.684
mgf022408m Mimulus guttatus mgf022408m I 0.684
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.683
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.683
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.683
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.682
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.682
TCM_016175 Theobroma cacao TCM_016175 I 0.682
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.682
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.681
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.680
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.680
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.678
mgf017136m Mimulus guttatus mgf017136m I 0.678
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.677
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.677
Pm023769 Prunus mume Pm023769 I 0.677
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.677