Lus10027412.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10027412.g T008854_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.753 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.753 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.714 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.714 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.714 0.860
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.692 0.880
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.692 0.880
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.692 0.880
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.692 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10027412 AP2 48 99

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.817
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.757
Lus10019455.g Linum usitatissimum Lus10019455.g I 0.755
DREB1D Arabidopsis thaliana AT5G51990 D 0.753
Bo9g104770 Brassica oleracea Bo9g104770 I 0.753
Bra028290 Brassica rapa Bra028290 I 0.753
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.753
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.753
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.753
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.753
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.753
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.750
Cla002362 Citrullus lanatus Cla002362 I 0.740
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.721
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.721
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.721
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.720
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.720
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.717
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.717
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.715
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.715
mgf026642m Mimulus guttatus mgf026642m I 0.715
DREB1C Arabidopsis thaliana AT4G25470 D 0.714
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.714
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.714
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.713
Cla006315 Citrullus lanatus Cla006315 I 0.713
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.712
POPTR_0014s05500 Populus trichocarpa POPTR_0014s05500 I 0.710
SapurV1A.0490s0260 Salix purpurea SapurV1A.0490s0260 I 0.710
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.709
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.708
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.708
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.708
PK23332.1 Cannabis sativa PK23332.1 I 0.708
GSMUA_Achr4G19660_001 Musa acuminata GSMUA_Achr4G19660_001 I 0.706
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.706
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.703
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.703
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.702
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.702
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.702
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.701
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.700
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.699
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.699
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.699
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.698
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.696
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.696
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.696
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.695
30147.m014313 Ricinus communis 30147.m014313 I 0.695
30190.m011120 Ricinus communis 30190.m011120 I 0.693
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.693
DREB1A Arabidopsis thaliana AT4G25480 D 0.692
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.692
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.691
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.691
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.691
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.691
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.690
MDP0000198054 Malus domestica MDP0000198054 I 0.689
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.688
Cla011674 Citrullus lanatus Cla011674 I 0.688
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.688
Eucgr.A02822 Eucalyptus grandis Eucgr.A02822 I 0.688
GLYMA12G30710 Glycine max GLYMA12G30710 I 0.687
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.687
Pm023775 Prunus mume Pm023775 I 0.687
mgf026339m Mimulus guttatus mgf026339m I 0.687
Eucgr.A02820 Eucalyptus grandis Eucgr.A02820 I 0.687
Eucgr.A02824 Eucalyptus grandis Eucgr.A02824 I 0.687
Eucgr.A02826 Eucalyptus grandis Eucgr.A02826 I 0.687
Eucgr.A02832 Eucalyptus grandis Eucgr.A02832 I 0.687
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.686
MDP0000154764 Malus domestica MDP0000154764 I 0.686
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.685
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.684
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.683
Eucgr.A02821 Eucalyptus grandis Eucgr.A02821 I 0.682
Eucgr.A02827 Eucalyptus grandis Eucgr.A02827 I 0.682
Eucgr.A02834 Eucalyptus grandis Eucgr.A02834 I 0.682
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.681
mgf016974m Mimulus guttatus mgf016974m I 0.681
mgf018631m Mimulus guttatus mgf018631m I 0.681
mgf018934m Mimulus guttatus mgf018934m I 0.681
mgf022408m Mimulus guttatus mgf022408m I 0.681
Eucgr.A02831 Eucalyptus grandis Eucgr.A02831 I 0.681
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.681
Ca_04504 Cicer arietinum Ca_04504 I 0.679
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.678
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.677
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.677
TCM_016175 Theobroma cacao TCM_016175 I 0.677
mgf017136m Mimulus guttatus mgf017136m I 0.677