GSMUA_Achr4G19660_001 (Musa acuminata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GSMUA_Achr4G19660_001 T002380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.719 0.824
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.719 0.824
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.683 0.765
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.683 0.765
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.683 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr4P19660_001 AP2 138 190

Links

Other AP2 family TFs
Other Musa acuminata TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr7G05900_001 Musa acuminata GSMUA_Achr7G05900_001 I 0.827
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.722
DREB1D Arabidopsis thaliana AT5G51990 D 0.719
Bo9g104770 Brassica oleracea Bo9g104770 I 0.719
Bra028290 Brassica rapa Bra028290 I 0.719
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.719
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.719
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.719
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.719
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.719
Cla002362 Citrullus lanatus Cla002362 I 0.709
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.709
BRADI1G49560 Brachypodium distachyon BRADI1G49560 I 0.708
BRADI1G49570 Brachypodium distachyon BRADI1G49570 I 0.708
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.706
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.701
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.693
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.693
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.693
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.693
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.691
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.690
mgf026642m Mimulus guttatus mgf026642m I 0.687
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.687
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.687
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.686
DREB1C Oryza indica BGIOSGA022219 N 0.685
GRMZM2G380377 Zea mays GRMZM2G380377 N 0.685
LPERR06G01360 Leersia perrieri LPERR06G01360 N 0.685
OMERI06G01670 Oryza meridionalis OMERI06G01670 N 0.685
ONIVA06G01850 Oryza nivara ONIVA06G01850 N 0.685
ORUFI06G01550 Oryza rufipogon ORUFI06G01550 N 0.685
DREB1C Oryza sativa OS06G0127100 N 0.685
Sb10g001620 Sorghum bicolor Sb10g001620 N 0.685
Si007199m.g Setaria italica Si007199m.g N 0.685
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.685
Pavir.J35991 Panicum virgatum Pavir.J35991 N 0.685
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.684
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.684
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.684
PK23332.1 Cannabis sativa PK23332.1 I 0.684
DREB1C Arabidopsis thaliana AT4G25470 D 0.683
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.683
Cla006315 Citrullus lanatus Cla006315 I 0.683
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.681
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.681
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.679
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.679
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.678
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.678
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.678
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.678
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.677