TCM_016175 (Theobroma cacao)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 TCM_016175 T005604_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.756 0.840
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.756 0.840
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.756 0.840
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.756 0.840
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.746 0.820
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.746 0.820
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.721 0.820
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.721 0.820
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.721 0.820
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.715 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.715 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.715 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.715 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.715 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.715 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.709 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.709 0.740
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.693 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY24622 AP2 67 118

Links

Other AP2 family TFs
Other Theobroma cacao TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.826
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.818
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.810
Pm023775 Prunus mume Pm023775 I 0.810
MDP0000154764 Malus domestica MDP0000154764 I 0.807
MDP0000198054 Malus domestica MDP0000198054 I 0.800
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.795
Pm023769 Prunus mume Pm023769 I 0.795
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.795
Cla011674 Citrullus lanatus Cla011674 I 0.792
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.789
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.788
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.786
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.783
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.782
Pm023772 Prunus mume Pm023772 I 0.780
mgf026642m Mimulus guttatus mgf026642m I 0.779
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.778
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.778
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.775
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.773
PK23332.1 Cannabis sativa PK23332.1 I 0.773
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.771
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.771
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.771
60638.m00016 Ricinus communis 60638.m00016 I 0.768
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.768
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.768
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.767
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.767
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.765
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.765
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.763
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.763
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.763
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.763
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.763
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.763
Cla006315 Citrullus lanatus Cla006315 I 0.761
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.760
mgf017136m Mimulus guttatus mgf017136m I 0.760
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.757
DREB1A Arabidopsis thaliana AT4G25480 D 0.756
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.756
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.755
30190.m011120 Ricinus communis 30190.m011120 I 0.754
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.753
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.751
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.751
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.750
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.750
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.749
mgf019061m Mimulus guttatus mgf019061m I 0.748
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.747
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.747
Cla002362 Citrullus lanatus Cla002362 I 0.747
DREB1D Arabidopsis thaliana AT5G51990 D 0.746
Bo9g104770 Brassica oleracea Bo9g104770 I 0.746
Bra028290 Brassica rapa Bra028290 I 0.746
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.746
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.746
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.746
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.746
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.746
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.746
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.745
30147.m014313 Ricinus communis 30147.m014313 I 0.745
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.743
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.742
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.742
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.742
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.742
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.741
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.738
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.736
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.736
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.736
Lus10017829.g Linum usitatissimum Lus10017829.g I 0.733
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.732
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.732
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.731
GLYMA01G42500 Glycine max GLYMA01G42500 I 0.730
MTR_6g465450 Medicago truncatula MTR_6g465450 I 0.730
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.730
Carubv10006965m.g Capsella rubella Carubv10006965m.g I 0.729
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.728
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.728
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.726
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.726
MTR_6g465530 Medicago truncatula MTR_6g465530 I 0.725
30190.m011119 Ricinus communis 30190.m011119 I 0.725
mgf026339m Mimulus guttatus mgf026339m I 0.724
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.724
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.724
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.723
DREB1C Arabidopsis thaliana AT4G25470 D 0.721
Bo01335s010 Brassica oleracea Bo01335s010 I 0.720
Bra016763 Brassica rapa Bra016763 I 0.720
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.720
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.720
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.719
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.718
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.718
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.717
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.717
DREB1F Arabidopsis thaliana AT1G12610 D 0.715
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.715
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.714
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.714
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.714
Bo8g108050 Brassica oleracea Bo8g108050 I 0.713
Bra026963 Brassica rapa Bra026963 I 0.713
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.713
PGSC0003DMG400012524 Solanum tuberosum PGSC0003DMG400012524 I 0.713
PRUPE_ppa014628mg Prunus persica PRUPE_ppa014628mg N 0.713
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.712
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.712
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.712
MTR_6g465850 Medicago truncatula MTR_6g465850 I 0.710
orange1.1g026103m.g Citrus sinensis orange1.1g026103m.g I 0.710
DREB1G Oryza indica BGIOSGA008804 I 0.709
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.709
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.709
OBART02G27760 Oryza barthii OBART02G27760 I 0.709
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.709
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.709
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.709
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.709
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.709
DREB1G Oryza sativa OS02G0677300 D 0.709
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.709
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.709
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.709
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.708
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.708
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.708
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.705
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.705
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.705
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.705
GLYMA12G09130 Glycine max GLYMA12G09130 I 0.703
Si018262m.g Setaria italica Si018262m.g I 0.699
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.699
MTR_5g010930 Medicago truncatula MTR_5g010930 I 0.698
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.698
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.698
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.697
Gorai.003G162700 Gossypium raimondii Gorai.003G162700 I 0.697
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.696
Ca_18948 Cicer arietinum Ca_18948 I 0.695
GLYMA17G14111 Glycine max GLYMA17G14111 I 0.694
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.693
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.693
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.693
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.692
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.691
cassava41218.m1 Manihot esculenta cassava41218.m1 I 0.691
chr3.LjT42M03.60.nd Lotus japonicus chr3.LjT42M03.60.nd I 0.690
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.687
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.685
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.685
GLYMA05G03560 Glycine max GLYMA05G03560 I 0.684
AMTR_s00069p00141520 Amborella trichopoda AMTR_s00069p00141520 I 0.683
Eucgr.A02830 Eucalyptus grandis Eucgr.A02830 I 0.682
Lus10031657.g Linum usitatissimum Lus10031657.g I 0.682
MTR_4g102660 Medicago truncatula MTR_4g102660 I 0.681
Pm019386 Prunus mume Pm019386 I 0.681
Bra019777 Brassica rapa Bra019777 I 0.680
Solyc08g007830.1 Solanum lycopersicum Solyc08g007830.1 I 0.678
Lus10027412.g Linum usitatissimum Lus10027412.g I 0.677