Carubv10006965m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10006965m.g T007843_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.749 0.907
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.749 0.907
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.745 0.884
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.745 0.884
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.745 0.884
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.745 0.884
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.716 0.837
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.716 0.837
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.716 0.837
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.687 0.767
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.687 0.767
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.678 0.744
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.678 0.744
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.678 0.744
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.678 0.744
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.678 0.744
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.678 0.744
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006965m AP2 51 95

Links

Other AP2 family TFs
Other Capsella rubella TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.780
Cla006315 Citrullus lanatus Cla006315 I 0.780
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.780
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.780
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.780
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.780
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.777
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.777
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.774
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.774
mgf026642m Mimulus guttatus mgf026642m I 0.774
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.774
PK23332.1 Cannabis sativa PK23332.1 I 0.774
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.761
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.759
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.758
30147.m014313 Ricinus communis 30147.m014313 I 0.754
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.753
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.752
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.752
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.751
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.751
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.751
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.751
DREB1D Arabidopsis thaliana AT5G51990 D 0.749
Bo9g104770 Brassica oleracea Bo9g104770 I 0.749
Bra028290 Brassica rapa Bra028290 I 0.749
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.749
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.749
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.749
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.749
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.749
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.748
MDP0000198054 Malus domestica MDP0000198054 I 0.747
DREB1A Arabidopsis thaliana AT4G25480 D 0.745
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.745
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.745
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.745
Pm023775 Prunus mume Pm023775 I 0.745
MDP0000154764 Malus domestica MDP0000154764 I 0.745
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.744
Cla002362 Citrullus lanatus Cla002362 I 0.742
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.741
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.740
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.740
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.739
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.739
mgf017136m Mimulus guttatus mgf017136m I 0.736
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.735
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.734
Cla011674 Citrullus lanatus Cla011674 I 0.733
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.732
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.732
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.731
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.731
PRUPE_ppa021197mg Prunus persica PRUPE_ppa021197mg I 0.730
Pm023769 Prunus mume Pm023769 I 0.730
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.729
TCM_016175 Theobroma cacao TCM_016175 I 0.729
Pm023772 Prunus mume Pm023772 I 0.722
GLYMA10G38440 Glycine max GLYMA10G38440 I 0.721
GLYMA20G29410 Glycine max GLYMA20G29410 I 0.721
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.721
Ciclev10007068m.g Citrus clementina Ciclev10007068m.g I 0.721
Eucgr.A02818 Eucalyptus grandis Eucgr.A02818 I 0.721
orange1.1g028094m.g Citrus sinensis orange1.1g028094m.g I 0.721
60638.m00016 Ricinus communis 60638.m00016 I 0.719
mgf019061m Mimulus guttatus mgf019061m I 0.719
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.718
DREB1C Arabidopsis thaliana AT4G25470 D 0.716
MTR_6g466130 Medicago truncatula MTR_6g466130 I 0.716
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.713
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.713
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.711
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.710
30190.m011120 Ricinus communis 30190.m011120 I 0.709
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.705
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.702
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.701
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.701
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.701
mgf026339m Mimulus guttatus mgf026339m I 0.700
Ciclev10021923m.g Citrus clementina Ciclev10021923m.g I 0.699
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.698
30190.m011119 Ricinus communis 30190.m011119 I 0.698
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.698
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.698
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.698
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.698
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.698
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.697
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.697
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.697
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.697
MTR_8g006410 Medicago truncatula MTR_8g006410 I 0.695
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.694
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.694
MTR_1g101600 Medicago truncatula MTR_1g101600 I 0.693
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.692
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.692
LjSGA_037211.1 Lotus japonicus LjSGA_037211.1 I 0.691
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.689
DREB1G Oryza indica BGIOSGA008804 I 0.687
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.687
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.687
OBART02G27760 Oryza barthii OBART02G27760 I 0.687
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.687
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.687
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.687
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.687
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.687
DREB1G Oryza sativa OS02G0677300 D 0.687
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.687
Si018262m.g Setaria italica Si018262m.g I 0.687
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.687
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.687
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.686
PRUPE_ppa017761mg Prunus persica PRUPE_ppa017761mg I 0.686
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.685
MTR_6g465430 Medicago truncatula MTR_6g465430 I 0.685
Bo8g108050 Brassica oleracea Bo8g108050 I 0.684
Bra026963 Brassica rapa Bra026963 I 0.684
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.684
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.684
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.684
Pm019386 Prunus mume Pm019386 I 0.682
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.681
Bo01335s010 Brassica oleracea Bo01335s010 I 0.680
Bra016763 Brassica rapa Bra016763 I 0.680
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.679
Solyc08g007820.1 Solanum lycopersicum Solyc08g007820.1 I 0.679
DREB1F Arabidopsis thaliana AT1G12610 D 0.678
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.678
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.678
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.678
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.678