AMTR_s00095p00096190 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00095p00096190 T000384_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.709 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.709 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.709 0.760
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.709 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.709 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.703 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.703 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.703 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.703 0.740
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.686 0.720
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.686 0.720
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.686 0.720
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.686 0.720
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.686 0.720
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.686 0.720
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERM98156 AP2 102 153

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.753
AMTR_s00040p00195730 Amborella trichopoda AMTR_s00040p00195730 I 0.748
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.746
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.745
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.745
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.740
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.740
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.739
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.730
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.729
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.728
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.725
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.721
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.721
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.719
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.718
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.718
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.717
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.716
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.716
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.716
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.716
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.716
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.716
30147.m014313 Ricinus communis 30147.m014313 I 0.715
Cla006315 Citrullus lanatus Cla006315 I 0.714
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.713
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.713
PK23332.1 Cannabis sativa PK23332.1 I 0.713
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.712
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.712
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.712
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.712
SapurV1A.0400s0160 Salix purpurea SapurV1A.0400s0160 I 0.712
30190.m011120 Ricinus communis 30190.m011120 I 0.711
DREB1C Arabidopsis thaliana AT4G25470 D 0.709
DREB1D Arabidopsis thaliana AT5G51990 D 0.709
Bo9g104770 Brassica oleracea Bo9g104770 I 0.709
Bra028290 Brassica rapa Bra028290 I 0.709
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.709
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.709
Cla002362 Citrullus lanatus Cla002362 I 0.709
60638.m00016 Ricinus communis 60638.m00016 I 0.709
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.709
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.709
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.709
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.709
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.708
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.707
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.706
mgf026642m Mimulus guttatus mgf026642m I 0.706
Gorai.006G046200 Gossypium raimondii Gorai.006G046200 I 0.706
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.705
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.704
30190.m011119 Ricinus communis 30190.m011119 I 0.704
DREB1A Arabidopsis thaliana AT4G25480 D 0.703
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.703
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.702
GSMUA_Achr10G15510_001 Musa acuminata GSMUA_Achr10G15510_001 I 0.701
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.700
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.700
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.700
gene32378-v1.0-hybrid Fragaria vesca gene32378-v1.0-hybrid I 0.700
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.699
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.698
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.698
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.698
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.698
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.698
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.698
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.696
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.695
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.695
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.693
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.693
MDP0000198054 Malus domestica MDP0000198054 I 0.693
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.692
Cla011674 Citrullus lanatus Cla011674 I 0.692
PRUPE_ppa010800mg Prunus persica PRUPE_ppa010800mg I 0.691
Pm023775 Prunus mume Pm023775 I 0.691
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.690
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.690
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.689
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.689
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.688
MDP0000154764 Malus domestica MDP0000154764 I 0.688
orange1.1g029015m.g Citrus sinensis orange1.1g029015m.g I 0.688
DREB1F Arabidopsis thaliana AT1G12610 D 0.686
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.686
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.686
Gorai.008G243600 Gossypium raimondii Gorai.008G243600 I 0.685
Bo01335s010 Brassica oleracea Bo01335s010 I 0.684
Bra016763 Brassica rapa Bra016763 I 0.684
cassava17064.m1 Manihot esculenta cassava17064.m1 I 0.683
evm.TU.supercontig_74.84 Carica papaya evm.TU.supercontig_74.84 I 0.683
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.682
Bo8g108050 Brassica oleracea Bo8g108050 I 0.681
Bra026963 Brassica rapa Bra026963 I 0.681
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.681
PRUPE_ppa010909mg Prunus persica PRUPE_ppa010909mg I 0.680
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.680
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.678
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.678
VIT_16s0100g00380 Vitis vinifera VIT_16s0100g00380 I 0.677