GSMUA_Achr10G15510_001 (Musa acuminata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 GSMUA_Achr10G15510_001 T002275_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.699 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.699 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.699 0.780
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.689 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.689 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.686 0.840
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.686 0.840
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.678 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.678 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.678 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.678 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr10P15510_001 AP2 66 117

Links

Other AP2 family TFs
Other Musa acuminata TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr2G20280_001 Musa acuminata GSMUA_Achr2G20280_001 I 0.737
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.714
PGSC0003DMG400038366 Solanum tuberosum PGSC0003DMG400038366 I 0.713
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.713
POPTR_0009s14990 Populus trichocarpa POPTR_0009s14990 I 0.710
SapurV1A.0219s0320 Salix purpurea SapurV1A.0219s0320 I 0.710
GSMUA_Achr6G13340_001 Musa acuminata GSMUA_Achr6G13340_001 I 0.707
POPTR_0004s19820 Populus trichocarpa POPTR_0004s19820 I 0.707
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.706
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.705
AMTR_s00095p00096190 Amborella trichopoda AMTR_s00095p00096190 I 0.701
DREB1C Arabidopsis thaliana AT4G25470 D 0.699
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.699
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.699
Solyc01g009440.1 Solanum lycopersicum Solyc01g009440.1 I 0.698
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.695
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.695
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.692
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.692
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.692
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.692
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.691
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.691
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.691
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.691
Aquca_122_00012 Aquilegia coerulea Aquca_122_00012 I 0.690
DREB1D Arabidopsis thaliana AT5G51990 D 0.689
Bo9g104770 Brassica oleracea Bo9g104770 I 0.689
Bra028290 Brassica rapa Bra028290 I 0.689
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.689
Cla002362 Citrullus lanatus Cla002362 I 0.689
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.689
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.689
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.689
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.689
Aquca_122_00013 Aquilegia coerulea Aquca_122_00013 I 0.687
Bo7g110320 Brassica oleracea Bo7g110320 I 0.686
Bra019162 Brassica rapa Bra019162 I 0.686
Q6T3U0_BRANA Brassica napus Q6T3U0_BRANA D 0.686
Q8S2T3_BRANA Brassica napus Q8S2T3_BRANA D 0.686
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.685
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.684
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.684
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.684
Bra022770 Brassica rapa Bra022770 I 0.682
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.682
Cla006315 Citrullus lanatus Cla006315 I 0.681
30147.m014313 Ricinus communis 30147.m014313 I 0.681
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.681
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.681
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.680
DREB1A Arabidopsis thaliana AT4G25480 D 0.678
VIT_06s0061g01400 Vitis vinifera VIT_06s0061g01400 I 0.678
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.678
PK23332.1 Cannabis sativa PK23332.1 I 0.678
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.677
VIT_11s0016g02140 Vitis vinifera VIT_11s0016g02140 I 0.677
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.677
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.677
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.677