ONIVA04G20840 (Oryza nivara)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ONIVA04G20840 T003596_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.854 1.000
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.808 0.940
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.808 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.705 0.780
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.705 0.780
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.705 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.701 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.701 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.701 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.701 0.800
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.700 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.700 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA04G20840.1 AP2 51 102

Links

Other AP2 family TFs
Other Oryza nivara TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1E Oryza indica BGIOSGA016950 I 0.854
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.854
OBART04G22220 Oryza barthii OBART04G22220 I 0.854
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.854
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.854
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.854
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.854
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.854
DREB1E Oryza sativa OS04G0572400 D 0.854
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.826
Sb06g025900 Sorghum bicolor Sb06g025900 I 0.826
Si011005m.g Setaria italica Si011005m.g I 0.826
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.816
DREB1G Oryza indica BGIOSGA008804 I 0.808
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.808
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.808
OBART02G27760 Oryza barthii OBART02G27760 I 0.808
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.808
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.808
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.808
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.808
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.808
DREB1G Oryza sativa OS02G0677300 D 0.808
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.808
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.808
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.808
Si018262m.g Setaria italica Si018262m.g I 0.798
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.793
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.793
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.738
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.731
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.730
DREB1C Arabidopsis thaliana AT4G25470 D 0.705
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.703
DREB1A Arabidopsis thaliana AT4G25480 D 0.701
DREB1D Arabidopsis thaliana AT5G51990 D 0.700
Bo9g104770 Brassica oleracea Bo9g104770 I 0.700
Bra028290 Brassica rapa Bra028290 I 0.700
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.700
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.700
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.700
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.700
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.700
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.699
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.699
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.699
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.699
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.698
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.697
GSMUA_Achr8G11980_001 Musa acuminata GSMUA_Achr8G11980_001 I 0.697
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.696
30147.m014313 Ricinus communis 30147.m014313 I 0.696
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.696
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.696
Cla002362 Citrullus lanatus Cla002362 I 0.695
mgf026642m Mimulus guttatus mgf026642m I 0.694
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.694
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.693
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.693
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.693
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.693
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.691
PGSC0003DMG400014311 Solanum tuberosum PGSC0003DMG400014311 I 0.691
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.691
PK23332.1 Cannabis sativa PK23332.1 I 0.691
GLYMA09G27180 Glycine max GLYMA09G27180 I 0.690
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.690
Bostr.7867s0360 Boechera stricta Bostr.7867s0360 I 0.690
Thhalv10027405m.g Eutrema salsugineum Thhalv10027405m.g I 0.690
MTR_6g465420 Medicago truncatula MTR_6g465420 I 0.688
PGSC0003DMG400014310 Solanum tuberosum PGSC0003DMG400014310 I 0.688
Cucsa.251030 Cucumis sativus Cucsa.251030 I 0.687
Eucgr.D01925 Eucalyptus grandis Eucgr.D01925 I 0.686
Eucgr.E00529 Eucalyptus grandis Eucgr.E00529 I 0.686
Cla006315 Citrullus lanatus Cla006315 I 0.685
30190.m011120 Ricinus communis 30190.m011120 I 0.685
SapurV1A.0068s0560 Salix purpurea SapurV1A.0068s0560 I 0.685
MTR_6g465460 Medicago truncatula MTR_6g465460 I 0.684
MTR_6g465510 Medicago truncatula MTR_6g465510 I 0.684
MTR_6g465690 Medicago truncatula MTR_6g465690 I 0.680
MTR_6g466000 Medicago truncatula MTR_6g466000 I 0.680
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.680
Cucsa.166340 Cucumis sativus Cucsa.166340 I 0.680
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.678