Sb06g025900 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb06g025900 T005026_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.826 0.960
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.797 0.940
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.797 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.690 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.690 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.690 0.760
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.689 0.800
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.689 0.800
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.689 0.800
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.689 0.800
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.689 0.800
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.689 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g025900.1 AP2 56 107

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G042756 Zea mays GRMZM2G042756 I 0.850
Si011005m.g Setaria italica Si011005m.g I 0.850
Pavir.Ga00931 Panicum virgatum Pavir.Ga00931 I 0.840
DREB1E Oryza indica BGIOSGA016950 I 0.826
LPERR04G18190 Leersia perrieri LPERR04G18190 I 0.826
OBART04G22220 Oryza barthii OBART04G22220 I 0.826
OGLUM04G22260 Oryza glumaepatula OGLUM04G22260 I 0.826
OMERI04G18770 Oryza meridionalis OMERI04G18770 I 0.826
ONIVA04G20840 Oryza nivara ONIVA04G20840 I 0.826
OPUNC04G19970 Oryza punctata OPUNC04G19970 I 0.826
ORGLA04G0192900 Oryza glaberrima ORGLA04G0192900 I 0.826
ORUFI04G23890 Oryza rufipogon ORUFI04G23890 I 0.826
DREB1E Oryza sativa OS04G0572400 D 0.826
DREB1G Oryza indica BGIOSGA008804 I 0.797
GRMZM2G137341 Zea mays GRMZM2G137341 I 0.797
LPERR02G22610 Leersia perrieri LPERR02G22610 I 0.797
OBART02G27760 Oryza barthii OBART02G27760 I 0.797
OGLUM02G28340 Oryza glumaepatula OGLUM02G28340 I 0.797
OMERI02G26980 Oryza meridionalis OMERI02G26980 I 0.797
ONIVA02G30790 Oryza nivara ONIVA02G30790 I 0.797
OPUNC02G25480 Oryza punctata OPUNC02G25480 I 0.797
ORUFI02G29230 Oryza rufipogon ORUFI02G29230 I 0.797
DREB1G Oryza sativa OS02G0677300 D 0.797
Sb04g031950 Sorghum bicolor Sb04g031950 I 0.797
Pavir.Aa00912 Panicum virgatum Pavir.Aa00912 I 0.797
Pavir.Ab02685 Panicum virgatum Pavir.Ab02685 I 0.797
Si018262m.g Setaria italica Si018262m.g I 0.787
BRADI3G51630 Brachypodium distachyon BRADI3G51630 I 0.782
MLOC_75886 Hordeum vulgare MLOC_75886 I 0.782
Aquca_012_00144 Aquilegia coerulea Aquca_012_00144 I 0.727
Aquca_013_00435 Aquilegia coerulea Aquca_013_00435 I 0.720
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.718
Aquca_013_00434 Aquilegia coerulea Aquca_013_00434 I 0.700
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.692
DREB1C Arabidopsis thaliana AT4G25470 D 0.690
DREB1A Arabidopsis thaliana AT4G25480 D 0.689
DREB1D Arabidopsis thaliana AT5G51990 D 0.689
Bo9g104770 Brassica oleracea Bo9g104770 I 0.689
Bra028290 Brassica rapa Bra028290 I 0.689
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.689
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.689
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.689
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.689
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.689
POPTR_0012s13870 Populus trichocarpa POPTR_0012s13870 I 0.685
30147.m014313 Ricinus communis 30147.m014313 I 0.685
cassava35062.m1 Manihot esculenta cassava35062.m1 I 0.685
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.685
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.685
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.685
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.685
Gorai.007G010100 Gossypium raimondii Gorai.007G010100 I 0.685
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.683
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.683
mgf026642m Mimulus guttatus mgf026642m I 0.683
Solyc03g026280.2 Solanum lycopersicum Solyc03g026280.2 I 0.682
PGSC0003DMG400014309 Solanum tuberosum PGSC0003DMG400014309 I 0.680
Cla002362 Citrullus lanatus Cla002362 I 0.680
POPTR_0015s13830 Populus trichocarpa POPTR_0015s13830 I 0.679
Solyc03g124110.1 Solanum lycopersicum Solyc03g124110.1 I 0.678
Cagra.2248s0026 Capsella grandiflora Cagra.2248s0026 I 0.678
evm.TU.supercontig_5.66 Carica papaya evm.TU.supercontig_5.66 I 0.677