cassava41240.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava41240.m1 T006928_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.784 0.939
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.784 0.939
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.784 0.939
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.726 0.837
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.694 0.816
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.684 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava41240.m1 AP2 40 91

Links

Other AP2 family TFs
Other Manihot esculenta TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004132 Calypte anna Aan_R004132 N
Afo_R000303 Aptenodytes forsteri Afo_R000303 N
Brh_R003060 Buceros rhinoceros Brh_R003060 N
ENSAPLG00000010735 Anas platyrhynchos ENSAPLG00000010735 N
NFXL1 Bos taurus ENSBTAG00000002201 N
NFXL1 Canis familiaris ENSCAFG00000001913 N
NFXL1 Callithrix jacchus ENSCJAG00000018893 N
NFXL1 Cavia porcellus ENSCPOG00000014371 N
ENSCSAG00000017157 Chlorocebus sabaeus ENSCSAG00000017157 N
nfxl1 Danio rerio ENSDARG00000070127 N
NFXL1 Dasypus novemcinctus ENSDNOG00000037969 N
NFXL1 Erinaceus europaeus ENSEEUG00000003714 N
ENSFALG00000003060 Ficedula albicollis ENSFALG00000003060 N
NFXL1 Felis catus ENSFCAG00000031403 N
NFXL1 Homo sapiens ENSG00000170448 N
NFXL1 Gorilla gorilla ENSGGOG00000008489 N
ENSLACG00000002228 Latimeria chalumnae ENSLACG00000002228 N
NFXL1 Loxodonta africana ENSLAFG00000014027 N
ENSLOCG00000012003 Lepisosteus oculatus ENSLOCG00000012003 N
NFXL1 Meleagris gallopavo ENSMGAG00000012041 N
NFXL1 Myotis lucifugus ENSMLUG00000008367 N
ENSMMUG00000021780 Macaca mulatta ENSMMUG00000021780 N
NFXL1 Monodelphis domestica ENSMODG00000020621 N
ENSMPUG00000005201 Mustela putorius furo ENSMPUG00000005201 N
Nfxl1 Mus musculus ENSMUSG00000072889 N
ENSNLEG00000017372 Nomascus leucogenys ENSNLEG00000017372 N
ENSOARG00000016535 Ovis aries ENSOARG00000016535 N
NFXL1 Oryctolagus cuniculus ENSOCUG00000008876 N
NFXL1 Otolemur garnettii ENSOGAG00000006702 N
ENSONIG00000005464 Oreochromis niloticus ENSONIG00000005464 N
ENSP00000370949 Macaca fascicularis ENSP00000370949 N
ENSP00000370949-D1 Bos grunniens ENSP00000370949-D1 N
ENSPANG00000025042 Papio anubis ENSPANG00000025042 N
ENSPPYG00000014711 Pongo abelii ENSPPYG00000014711 N
ENSPSIG00000010167 Pelodiscus sinensis ENSPSIG00000010167 N
NFXL1 Pan troglodytes ENSPTRG00000016035 N
NFXL1 Pteropus vampyrus ENSPVAG00000011462 N
Nfxl1 Rattus norvegicus ENSRNOG00000058588 N
ENSSHAG00000002875 Sarcophilus harrisii ENSSHAG00000002875 N
NFXL1 Sus scrofa ENSSSCG00000008816 N
NFXL1 Taeniopygia guttata ENSTGUG00000008171 N
nfxl1 Tetraodon nigroviridis ENSTNIG00000000336 N
Gfo_R010405 Geospiza fortis Gfo_R010405 N
Myotis_brandtii_NFXL1_10022858 Myotis brandtii Myotis_brandtii_NFXL1_10022858 N
Tal_R006254 Tyto alba Tal_R006254 N