estExt_fgenesh1_pg.C_4800009 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 estExt_fgenesh1_pg.C_4800009 T007193_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_4800009
M01639_2.00		 Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.783 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01639_2.00 AP2 49 100

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_4800009 AP2 49 100

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_11381 Ancylostoma ceylanicum ANCCEY_11381 N
ANCDUO_12692 Ancylostoma duodenale ANCDUO_12692 N
ASIM_0001118301 Anisakis simplex ASIM_0001118301 N
ASU_11830 Ascaris suum ASU_11830 N
Bm3100 Brugia malayi Bm3100 N
BTMF_0001372201 Brugia timori BTMF_0001372201 N
CBG24087 Caenorhabditis briggsae CBG24087 N
CBN15046 Caenorhabditis brenneri CBN15046 N
CJA09664 Caenorhabditis japonica CJA09664 N
CRE20463 Caenorhabditis remanei CRE20463 N
DICVIV_01724 Dictyocaulus viviparus DICVIV_01724 N
GPUH_0001426001 Gongylonema pulchrum GPUH_0001426001 N
L596_g19739 Steinernema carpocapsae L596_g19739 N
L889_g19003 Steinernema feltiae L889_g19003 N
L892_g30928 Steinernema scapterisci L892_g30928 N
L893_g8389 Steinernema glaseri L893_g8389 N
LOAG_04530 Loa loa LOAG_04530 N
nDi.2.2.2.g03160 Dirofilaria immitis nDi.2.2.2.g03160 N
nOo.2.0.1.g00297 Onchocerca ochengi nOo.2.0.1.g00297 N
OESDEN_14708 Oesophagostomum dentatum OESDEN_14708 N
OFLC_0001424701 Onchocerca flexuosa OFLC_0001424701 N
PEQ_0000498301 Parascaris equorum PEQ_0000498301 N
PTRK_0001622300 Parastrongyloides trichosuri PTRK_0001622300 N
RSKR_0000760200 Rhabditophanes kr3021 RSKR_0000760200 N
scaffold198-EXSNAP2012.12 Pristionchus exspectatus scaffold198-EXSNAP2012.12 N
SSTP_0001223600 Strongyloides stercoralis SSTP_0001223600 N
SVE_0910500 Strongyloides venezuelensis SVE_0910500 N
SVUK_0000031201 Strongylus vulgaris SVUK_0000031201 N
TCLT_0000237101 Thelazia callipaeda TCLT_0000237101 N
nhr-19 Caenorhabditis elegans WBGene00003618 N
WBGene00247746 Onchocerca volvulus WBGene00247746 N