estExt_gwp_gw1.C_550163 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 estExt_gwp_gw1.C_550163 T007212_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00		 Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.783 0.960
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.714 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01640_2.00 AP2 46 97

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_550163 AP2 46 97

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.804
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.790
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.790
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.783
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.759
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.723
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.721
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.715
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.714
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.709
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I 0.694
Pm027339 Prunus mume Pm027339 I 0.694
BRADI5G17620 Brachypodium distachyon BRADI5G17620 I 0.686
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.685
SELMODRAFT_69412 Selaginella moellendorffii SELMODRAFT_69412 I 0.681
SELMODRAFT_69413 Selaginella moellendorffii SELMODRAFT_69413 I 0.681
LjSGA_100683.2.1 Lotus japonicus LjSGA_100683.2.1 I 0.678
MTR_6g088425 Medicago truncatula MTR_6g088425 I 0.677
Traes_2AL_0F08552FB Triticum aestivum Traes_2AL_0F08552FB I 0.677
Traes_2BL_984787AC0 Triticum aestivum Traes_2BL_984787AC0 I 0.677
Ca_17883 Cicer arietinum Ca_17883 I 0.677