gw1.14.214.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.14.214.1 T007263_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.736 0.958
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.723 0.875
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.695 0.771
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.681 0.854
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.14.214.1 AP2 1 50

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.784
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.737
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.736
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.736
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.725
estExt_gwp_gw1.C_550163 Physcomitrella patens estExt_gwp_gw1.C_550163 D 0.723
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.722
gw1.15.199.1 Physcomitrella patens gw1.15.199.1 I 0.711
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.707
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.707
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.707
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.707
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.707
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.707
Si007144m.g Setaria italica Si007144m.g I 0.707
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.707
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.707
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.707
Si018188m.g Setaria italica Si018188m.g I 0.707
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.707
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.707
F775_14820 Aegilops tauschii F775_14820 I 0.707
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.707
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.707
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.707
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.707
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.707
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.707
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.706
gw1.259.45.1 Physcomitrella patens gw1.259.45.1 N 0.706
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.706
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.703
BRADI2G06180 Brachypodium distachyon BRADI2G06180 I 0.702
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.701
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.701
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.701
GRMZM2G073047 Zea mays GRMZM2G073047 I 0.698
OB06G25840 Oryza brachyantha OB06G25840 I 0.697
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.696
F775_11989 Aegilops tauschii F775_11989 I 0.696
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.696
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.695
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.695
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.695
Si039427m.g Setaria italica Si039427m.g I 0.695
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.695
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.693
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.693
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.692
Cla023465 Citrullus lanatus Cla023465 I 0.692
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.691
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.690
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.689
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.689
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.689
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.689
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.689
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.689
gw1.155.87.1 Physcomitrella patens gw1.155.87.1 I 0.686
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.683
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.681
estExt_gwp_gw1.C_150120 Physcomitrella patens estExt_gwp_gw1.C_150120 N 0.680
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.680
OBART02G09680 Oryza barthii OBART02G09680 I 0.677
AC187157.4_FG001 Zea mays AC187157.4_FG001 I 0.677
GSMUA_Achr2G09430_001 Musa acuminata GSMUA_Achr2G09430_001 I 0.677