gw1.155.87.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.155.87.1 T007267_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.773 0.918
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.720 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.155.87.1 AP2 1 51

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.296.16.1 Physcomitrella patens gw1.296.16.1 I 0.781
e_gw1.60.212.1 Physcomitrella patens e_gw1.60.212.1 I 0.778
gw1.55.249.1 Physcomitrella patens gw1.55.249.1 I 0.773
gw1.8.141.1 Physcomitrella patens gw1.8.141.1 D 0.773
gw1.480.6.1 Physcomitrella patens gw1.480.6.1 I 0.753
SELMODRAFT_73146 Selaginella moellendorffii SELMODRAFT_73146 I 0.720
estExt_fgenesh1_pg.C_4800009 Physcomitrella patens estExt_fgenesh1_pg.C_4800009 D 0.720
SELMODRAFT_73159 Selaginella moellendorffii SELMODRAFT_73159 I 0.712
gw1.276.83.1 Physcomitrella patens gw1.276.83.1 I 0.699
gw1.117.121.1 Physcomitrella patens gw1.117.121.1 I 0.690
gw1.14.214.1 Physcomitrella patens gw1.14.214.1 I 0.686
gw1.133.82.1 Physcomitrella patens gw1.133.82.1 I 0.683
POPTR_0002s17320 Populus trichocarpa POPTR_0002s17320 I 0.681
POPTR_0855s00200 Populus trichocarpa POPTR_0855s00200 I 0.681
POPTR_0002s17330 Populus trichocarpa POPTR_0002s17330 I 0.681
SapurV1A.0013s0250 Salix purpurea SapurV1A.0013s0250 I 0.681
MTR_7g117690 Medicago truncatula MTR_7g117690 I 0.680
GLYMA03G41910 Glycine max GLYMA03G41910 I 0.678
GLYMA16G02680 Glycine max GLYMA16G02680 I 0.677
SELMODRAFT_73150 Selaginella moellendorffii SELMODRAFT_73150 I 0.677
SELMODRAFT_73157 Selaginella moellendorffii SELMODRAFT_73157 I 0.677