Carubv10023556m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10023556m.g T007913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.699 0.816
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.699 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023556m AP2 81 132
Carubv10023590m AP2 70 121

Links

Other AP2 family TFs
Other Capsella rubella TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000493901 Angiostrongylus costaricensis ACOC_0000493901 N
ALUE_0000347301 Ascaris lumbricoides ALUE_0000347301 N
ASIM_0001085501 Anisakis simplex ASIM_0001085501 N
ASU_10686 Ascaris suum ASU_10686 N
CBG08484 Caenorhabditis briggsae CBG08484 N
CRE28107 Caenorhabditis remanei CRE28107 N
DME_0000295201 Dracunculus medinensis DME_0000295201 N
EEL_0000257001 Elaeophora elaphi EEL_0000257001 N
HPLM_0001248301 Haemonchus placei HPLM_0001248301 N
NBR_0001111401 Nippostrongylus brasiliensis NBR_0001111401 I
NECAME_01451 Necator americanus NECAME_01451 N
nOo.2.0.1.g11935 Onchocerca ochengi nOo.2.0.1.g11935 N
PEQ_0000501101 Parascaris equorum PEQ_0000501101 N
PTRK_0001384100 Parastrongyloides trichosuri PTRK_0001384100 N
SMUV_0000990001 Syphacia muris SMUV_0000990001 N
SPAL_0001441800 Strongyloides papillosus SPAL_0001441800 N
SSTP_0000594700 Strongyloides stercoralis SSTP_0000594700 N
TCNE_0000897001 Toxocara canis TCNE_0000897001 N
TELCIR_08176 Teladorsagia circumcincta TELCIR_08176 N