Pavir.Aa01184 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Aa01184 T009328_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.813 0.898
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.813 0.898
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.796 0.878
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.796 0.878
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.796 0.878
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.776 0.878
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.768 0.959
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.730 0.755
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.722 0.796
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.714 0.796
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.714 0.796
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.714 0.796
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.711 0.735
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.711 0.776
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.710 0.694
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.709 0.735
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.709 0.735
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.709 0.735
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.707 0.714
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.700 0.735
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.700 0.735
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.700 0.735
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.698 0.735
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.698 0.735
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.698 0.735
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.696 0.673
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.695 0.776
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.695 0.776
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.695 0.776
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.689 0.796
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.689 0.796
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.689 0.796
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.689 0.796
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.689 0.796
0100010458
M01644_2.00 		Ostreococcus tauri
MGCCGSCR
YGSCGGCK		 PBM
Weirauch et al.(2014)
pTH9447 		0.688 0.714
ERF6
M01621_2.00 		Arabidopsis thaliana
NNGCCGGCVN
NBGCCGGCNN		 PBM
Weirauch et al.(2014)
pTH7228 		0.686 0.714
ERF6
M06637_2.00 		Arabidopsis thaliana
NHNHHDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF6_col 		0.686 0.714
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.680 0.755
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.679 0.694
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.679 0.694
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.679 0.694
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.678 0.714
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.678 0.714
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.678 0.694
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.678 0.694
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.678 0.694
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.677 0.714
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01184.1.p AP2 147 199

Links

Other AP2 family TFs
Other Panicum virgatum TFs

1061 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28281.m000379 Ricinus communis 28281.m000379 I
29889.m003372 Ricinus communis 29889.m003372 I
AMTR_s00038p00173360 Amborella trichopoda AMTR_s00038p00173360 I
AMTR_s00045p00052450 Amborella trichopoda AMTR_s00045p00052450 I
Aquca_003_00380 Aquilegia coerulea Aquca_003_00380 I
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I
Aquca_010_00201 Aquilegia coerulea Aquca_010_00201 I
CMTA3 Arabidopsis thaliana AT2G22300 D
EICBP.B Arabidopsis thaliana AT5G09410 D
CMTA2 Arabidopsis thaliana AT5G64220 D
BGIOSGA011302 Oryza indica BGIOSGA011302 I
BGIOSGA012779 Oryza indica BGIOSGA012779 I
BGIOSGA023886 Oryza indica BGIOSGA023886 I
BGIOSGA032809 Oryza indica BGIOSGA032809 I
Bo4g136970 Brassica oleracea Bo4g136970 I
Bo4g149510 Brassica oleracea Bo4g149510 I
Bo9g018010 Brassica oleracea Bo9g018010 I
Bo9g174050 Brassica oleracea Bo9g174050 I
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I
Bostr.13129s0055 Boechera stricta Bostr.13129s0055 I
Bostr.5022s0003 Boechera stricta Bostr.5022s0003 I
Bra009382 Brassica rapa Bra009382 I
Bra030248 Brassica rapa Bra030248 I
Bra037769 Brassica rapa Bra037769 I
Bra038534 Brassica rapa Bra038534 I
BRADI1G21372 Brachypodium distachyon BRADI1G21372 I
BRADI1G71810 Brachypodium distachyon BRADI1G71810 I
BRADI3G23800 Brachypodium distachyon BRADI3G23800 I
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I
Cagra.1365s0113 Capsella grandiflora Cagra.1365s0113 I
Cagra.2300s0004 Capsella grandiflora Cagra.2300s0004 I
Carubv10000120m.g Capsella rubella Carubv10000120m.g I
Carubv10024738m.g Capsella rubella Carubv10024738m.g I
Carubv10025787m.g Capsella rubella Carubv10025787m.g I
cassava1518.valid.m1 Manihot esculenta cassava1518.valid.m1 I
Ca_05255 Cicer arietinum Ca_05255 I
Ca_09562 Cicer arietinum Ca_09562 I
chr4.CM0182.510.nc Lotus japonicus chr4.CM0182.510.nc I
chr4.LjT13D08.100.nd Lotus japonicus chr4.LjT13D08.100.nd I
chr6.CM0314.100.nd Lotus japonicus chr6.CM0314.100.nd I
Ciclev10004234m.g Citrus clementina Ciclev10004234m.g I
Ciclev10024764m.g Citrus clementina Ciclev10024764m.g I
Cla013051 Citrullus lanatus Cla013051 I
Cla018421 Citrullus lanatus Cla018421 I
Cucsa.217940 Cucumis sativus Cucsa.217940 I
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I
Eucgr.I02632 Eucalyptus grandis Eucgr.I02632 I
Eucgr.I02662 Eucalyptus grandis Eucgr.I02662 I
evm.TU.supercontig_146.41 Carica papaya evm.TU.supercontig_146.41 I
evm.TU.supercontig_213.9 Carica papaya evm.TU.supercontig_213.9 I
F775_11311 Aegilops tauschii F775_11311 I
F775_29292 Aegilops tauschii F775_29292 I
CAMTA3 Arabidopsis lyrata fgenesh2_kg.4__153__AT2G22300.2 I
EICBP.B Arabidopsis lyrata fgenesh2_kg.6__888__AT5G09410.2 I
gene29100-v1.0-hybrid Fragaria vesca gene29100-v1.0-hybrid I
GLYMA05G24430 Glycine max GLYMA05G24430 I
GLYMA05G31190 Glycine max GLYMA05G31190 I
GLYMA08G07680 Glycine max GLYMA08G07680 I
GLYMA08G14370 Glycine max GLYMA08G14370 I
GLYMA08G19101 Glycine max GLYMA08G19101 I
GLYMA15G05900 Glycine max GLYMA15G05900 I
GLYMA17G04310 Glycine max GLYMA17G04310 I
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I
Gorai.011G204700 Gossypium raimondii Gorai.011G204700 I
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I
GRMZM2G341747 Zea mays GRMZM2G341747 I
GRMZM2G431243 Zea mays GRMZM2G431243 I
GRMZM2G447551 Zea mays GRMZM2G447551 I
GSMUA_Achr1G21540_001 Musa acuminata GSMUA_Achr1G21540_001 I
GSMUA_Achr3G08460_001 Musa acuminata GSMUA_Achr3G08460_001 I
GSMUA_Achr6G10390_001 Musa acuminata GSMUA_Achr6G10390_001 I
GSMUA_AchrUn_randomG02100_001 Musa acuminata GSMUA_AchrUn_randomG02100_001 I
GSMUA_AchrUn_randomG08930_001 Musa acuminata GSMUA_AchrUn_randomG08930_001 I
gw1.188.72.1 Physcomitrella patens gw1.188.72.1 I
LPERR03G05920 Leersia perrieri LPERR03G05920 I
LPERR03G17060 Leersia perrieri LPERR03G17060 I
LPERR07G19680 Leersia perrieri LPERR07G19680 I
LPERR10G05550 Leersia perrieri LPERR10G05550 I
Lus10003405.g Linum usitatissimum Lus10003405.g I
Lus10041704.g Linum usitatissimum Lus10041704.g I
MDP0000139862 Malus domestica MDP0000139862 I
MDP0000290409 Malus domestica MDP0000290409 I
mgf010601m Mimulus guttatus mgf010601m I
mgf015897m Mimulus guttatus mgf015897m I
mgf024932m Mimulus guttatus mgf024932m I
MLOC_38704 Hordeum vulgare MLOC_38704 I
MLOC_63299 Hordeum vulgare MLOC_63299 I
MTR_2g008840 Medicago truncatula MTR_2g008840 I
MTR_8g090205 Medicago truncatula MTR_8g090205 I
OB03G16740 Oryza brachyantha OB03G16740 I
OB03G29080 Oryza brachyantha OB03G29080 I
OB07G28190 Oryza brachyantha OB07G28190 I
OB10G16130 Oryza brachyantha OB10G16130 I
OBART03G06570 Oryza barthii OBART03G06570 I
OBART03G19880 Oryza barthii OBART03G19880 I
OBART07G22710 Oryza barthii OBART07G22710 I
OBART10G08060 Oryza barthii OBART10G08060 I
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I
OGLUM07G22660 Oryza glumaepatula OGLUM07G22660 I
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I
OLONG_001033 Oryza longistaminata OLONG_001033 I
OLONG_003971 Oryza longistaminata OLONG_003971 I
OLONG_004418 Oryza longistaminata OLONG_004418 I
OLONG_018130 Oryza longistaminata OLONG_018130 I
OMERI03G06500 Oryza meridionalis OMERI03G06500 I
OMERI03G17850 Oryza meridionalis OMERI03G17850 I
ONIVA02G06230 Oryza nivara ONIVA02G06230 I
ONIVA03G21570 Oryza nivara ONIVA03G21570 I
ONIVA07G22160 Oryza nivara ONIVA07G22160 I
ONIVA10G07730 Oryza nivara ONIVA10G07730 I
OPUNC03G18730 Oryza punctata OPUNC03G18730 I
OPUNC07G21310 Oryza punctata OPUNC07G21310 I
OPUNC10G06950 Oryza punctata OPUNC10G06950 I
orange1.1g001365m.g Citrus sinensis orange1.1g001365m.g I
orange1.1g001406m.g Citrus sinensis orange1.1g001406m.g I
orange1.1g001759m.g Citrus sinensis orange1.1g001759m.g I
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I
ORGLA07G0175700 Oryza glaberrima ORGLA07G0175700 I
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I
ORGLA10G0167300 Oryza glaberrima ORGLA10G0167300 I
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I
ORUFI07G23760 Oryza rufipogon ORUFI07G23760 I
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I
OS03G0191000 Oryza sativa OS03G0191000 I
OS10G0375600 Oryza sativa OS10G0375600 I
Pavir.Ba00386 Panicum virgatum Pavir.Ba00386 I
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I
Pavir.Ia03131 Panicum virgatum Pavir.Ia03131 I
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I
Pavir.J35200 Panicum virgatum Pavir.J35200 I
Pavir.J38535 Panicum virgatum Pavir.J38535 I
PK04004.1 Cannabis sativa PK04004.1 I
PK28233.1 Cannabis sativa PK28233.1 I
Pm002007 Prunus mume Pm002007 I
Pm008450 Prunus mume Pm008450 I
POPTR_0005s07660 Populus trichocarpa POPTR_0005s07660 I
POPTR_0007s05410 Populus trichocarpa POPTR_0007s05410 I
PRUPE_ppa000912mg Prunus persica PRUPE_ppa000912mg I
SapurV1A.0039s0030 Salix purpurea SapurV1A.0039s0030 I
SapurV1A.0072s0470 Salix purpurea SapurV1A.0072s0470 I
SapurV1A.0403s0170 Salix purpurea SapurV1A.0403s0170 I
Sb0012s010230 Sorghum bicolor Sb0012s010230 I
Sb01g033650 Sorghum bicolor Sb01g033650 I
Sb01g044480 Sorghum bicolor Sb01g044480 I
Sb02g039710 Sorghum bicolor Sb02g039710 I
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I
SELMODRAFT_413101 Selaginella moellendorffii SELMODRAFT_413101 I
SELMODRAFT_441667 Selaginella moellendorffii SELMODRAFT_441667 I
Si028797m.g Setaria italica Si028797m.g I
Si034046m.g Setaria italica Si034046m.g I
Si034054m.g Setaria italica Si034054m.g I
Si034076m.g Setaria italica Si034076m.g I
Solyc01g105230.2 Solanum lycopersicum Solyc01g105230.2 I
Solyc04g056270.2 Solanum lycopersicum Solyc04g056270.2 I
TCM_001108 Theobroma cacao TCM_001108 I
TCM_007482 Theobroma cacao TCM_007482 I
Thhalv10000026m.g Eutrema salsugineum Thhalv10000026m.g I
Thhalv10003564m.g Eutrema salsugineum Thhalv10003564m.g I
Thhalv10012552m.g Eutrema salsugineum Thhalv10012552m.g I
Traes_2AS_506D953C1 Triticum aestivum Traes_2AS_506D953C1 I
Traes_2DS_D05DC56BD Triticum aestivum Traes_2DS_D05DC56BD I
Traes_4AL_2F7E6536A Triticum aestivum Traes_4AL_2F7E6536A I
Traes_4DL_C2F35966E Triticum aestivum Traes_4DL_C2F35966E I
TRIUR3_23792 Triticum urartu TRIUR3_23792 I
VIT_05s0020g00630 Vitis vinifera VIT_05s0020g00630 I
CAMTA3 Vitis vinifera VIT_07s0141g00250 I