Pavir.J35200 (Panicum virgatum)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Pavir.J35200 T163586_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.842 0.842
EICBP.B
M06828_2.00 		Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH		 Dap-seq
OMalley et al.(2016)
CAMTA1_col_a 		0.816 0.816
CMTA3
M01900_2.00 		Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB		 PBM
Weirauch et al.(2014)
pTH8209 		0.763 0.763
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J35200.1.p CG-1 131 245

Links

Other CG-1 family TFs
Other Panicum virgatum TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11311 Aegilops tauschii F775_11311 I 0.991
Si028797m.g Setaria italica Si028797m.g I 0.991
Traes_2AS_506D953C1 Triticum aestivum Traes_2AS_506D953C1 I 0.991
Traes_2DS_D05DC56BD Triticum aestivum Traes_2DS_D05DC56BD I 0.991
TRIUR3_23792 Triticum urartu TRIUR3_23792 I 0.991
Pavir.Ba00386 Panicum virgatum Pavir.Ba00386 I 0.991
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.982
Sb02g039710 Sorghum bicolor Sb02g039710 I 0.982
BRADI1G21372 Brachypodium distachyon BRADI1G21372 I 0.974
LPERR07G19680 Leersia perrieri LPERR07G19680 I 0.974
OBART07G22710 Oryza barthii OBART07G22710 I 0.974
OGLUM07G22660 Oryza glumaepatula OGLUM07G22660 I 0.974
OLONG_018130 Oryza longistaminata OLONG_018130 I 0.974
ONIVA07G22160 Oryza nivara ONIVA07G22160 I 0.974
OPUNC07G21310 Oryza punctata OPUNC07G21310 I 0.974
ORGLA07G0175700 Oryza glaberrima ORGLA07G0175700 I 0.974
ORGLA10G0167300 Oryza glaberrima ORGLA10G0167300 I 0.974
ORUFI07G23760 Oryza rufipogon ORUFI07G23760 I 0.974
BGIOSGA023886 Oryza indica BGIOSGA023886 I 0.965
OB07G28190 Oryza brachyantha OB07G28190 I 0.947
Pavir.Ia03131 Panicum virgatum Pavir.Ia03131 I 0.895
GRMZM2G431243 Zea mays GRMZM2G431243 I 0.893
BRADI1G60817 Brachypodium distachyon BRADI1G60817 I 0.886
Sb01g033650 Sorghum bicolor Sb01g033650 I 0.886
Si034054m.g Setaria italica Si034054m.g I 0.886
OB03G29080 Oryza brachyantha OB03G29080 I 0.877
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.868
LPERR03G17060 Leersia perrieri LPERR03G17060 I 0.868
OBART03G19880 Oryza barthii OBART03G19880 I 0.868
OBART10G08060 Oryza barthii OBART10G08060 I 0.868
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.868
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.868
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.868
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.868
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.868
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.868
OPUNC10G06950 Oryza punctata OPUNC10G06950 I 0.868
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.868
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.868
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.868
OS10G0375600 Oryza sativa OS10G0375600 I 0.868
cassava1518.valid.m1 Manihot esculenta cassava1518.valid.m1 I 0.868
BGIOSGA032809 Oryza indica BGIOSGA032809 I 0.860
GSMUA_Achr6G10390_001 Musa acuminata GSMUA_Achr6G10390_001 I 0.860
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.860
OB03G16740 Oryza brachyantha OB03G16740 I 0.860
OB10G16130 Oryza brachyantha OB10G16130 I 0.860
OPUNC03G18730 Oryza punctata OPUNC03G18730 I 0.860
BGIOSGA011302 Oryza indica BGIOSGA011302 I 0.851
Bo9g018010 Brassica oleracea Bo9g018010 I 0.851
Bra037769 Brassica rapa Bra037769 I 0.851
GRMZM2G447551 Zea mays GRMZM2G447551 I 0.851
LPERR03G05920 Leersia perrieri LPERR03G05920 I 0.851
OBART03G06570 Oryza barthii OBART03G06570 I 0.851
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I 0.851
OLONG_001033 Oryza longistaminata OLONG_001033 I 0.851
OMERI03G06500 Oryza meridionalis OMERI03G06500 I 0.851
ONIVA02G06230 Oryza nivara ONIVA02G06230 I 0.851
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I 0.851
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I 0.851
OS03G0191000 Oryza sativa OS03G0191000 I 0.851
Si034076m.g Setaria italica Si034076m.g I 0.851
TCM_007482 Theobroma cacao TCM_007482 I 0.851
Pavir.J38535 Panicum virgatum Pavir.J38535 I 0.851
CMTA2 Arabidopsis thaliana AT5G64220 D 0.842
BRADI1G71810 Brachypodium distachyon BRADI1G71810 I 0.842
BRADI3G23800 Brachypodium distachyon BRADI3G23800 I 0.842
GLYMA08G07680 Glycine max GLYMA08G07680 I 0.842
GLYMA15G05900 Glycine max GLYMA15G05900 I 0.842
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.842
GSMUA_Achr1G21540_001 Musa acuminata GSMUA_Achr1G21540_001 I 0.842
GSMUA_AchrUn_randomG02100_001 Musa acuminata GSMUA_AchrUn_randomG02100_001 I 0.842
GSMUA_AchrUn_randomG08930_001 Musa acuminata GSMUA_AchrUn_randomG08930_001 I 0.842
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.842
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.842
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.842
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.842
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.842
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.842
Eucgr.I02662 Eucalyptus grandis Eucgr.I02662 I 0.842
evm.TU.supercontig_213.9 Carica papaya evm.TU.supercontig_213.9 I 0.842
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.842
orange1.1g001406m.g Citrus sinensis orange1.1g001406m.g I 0.842
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.842
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.842
SapurV1A.0039s0030 Salix purpurea SapurV1A.0039s0030 I 0.842
Thhalv10003564m.g Eutrema salsugineum Thhalv10003564m.g I 0.842
chr6.CM0314.100.nd Lotus japonicus chr6.CM0314.100.nd I 0.842
Bo4g136970 Brassica oleracea Bo4g136970 I 0.833
F775_29292 Aegilops tauschii F775_29292 I 0.833
EICBP.B Arabidopsis lyrata fgenesh2_kg.6__888__AT5G09410.2 I 0.833
GLYMA05G24430 Glycine max GLYMA05G24430 I 0.833
GLYMA08G14370 Glycine max GLYMA08G14370 I 0.833
GLYMA08G19101 Glycine max GLYMA08G19101 I 0.833
MLOC_38704 Hordeum vulgare MLOC_38704 I 0.833
MTR_2g008840 Medicago truncatula MTR_2g008840 I 0.833
Si034046m.g Setaria italica Si034046m.g I 0.833
Solyc04g056270.2 Solanum lycopersicum Solyc04g056270.2 I 0.833
Traes_4AL_2F7E6536A Triticum aestivum Traes_4AL_2F7E6536A I 0.833
Traes_4DL_C2F35966E Triticum aestivum Traes_4DL_C2F35966E I 0.833
Ca_05255 Cicer arietinum Ca_05255 I 0.833
Ciclev10024764m.g Citrus clementina Ciclev10024764m.g I 0.833
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I 0.833
orange1.1g001365m.g Citrus sinensis orange1.1g001365m.g I 0.833
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.829
GLYMA05G31190 Glycine max GLYMA05G31190 I 0.825
POPTR_0005s07660 Populus trichocarpa POPTR_0005s07660 I 0.825
POPTR_0007s05410 Populus trichocarpa POPTR_0007s05410 I 0.825
Cucsa.217940 Cucumis sativus Cucsa.217940 I 0.825
Aquca_010_00201 Aquilegia coerulea Aquca_010_00201 I 0.825
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I 0.825
PK04004.1 Cannabis sativa PK04004.1 I 0.825
PK28233.1 Cannabis sativa PK28233.1 I 0.825
AMTR_s00038p00173360 Amborella trichopoda AMTR_s00038p00173360 I 0.816
EICBP.B Arabidopsis thaliana AT5G09410 D 0.816
Bo9g174050 Brassica oleracea Bo9g174050 I 0.816
Bra009382 Brassica rapa Bra009382 I 0.816
TCM_001108 Theobroma cacao TCM_001108 I 0.816
VIT_05s0020g00630 Vitis vinifera VIT_05s0020g00630 I 0.816
Cla013051 Citrullus lanatus Cla013051 I 0.816
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.816
Lus10041704.g Linum usitatissimum Lus10041704.g I 0.816
SapurV1A.0403s0170 Salix purpurea SapurV1A.0403s0170 I 0.816
chr4.CM0182.510.nc Lotus japonicus chr4.CM0182.510.nc I 0.816
OLONG_004418 Oryza longistaminata OLONG_004418 I 0.811
Pm002007 Prunus mume Pm002007 I 0.807
Bostr.13129s0055 Boechera stricta Bostr.13129s0055 I 0.807
Cagra.1365s0113 Capsella grandiflora Cagra.1365s0113 I 0.807
Carubv10000120m.g Capsella rubella Carubv10000120m.g I 0.807
MDP0000290409 Malus domestica MDP0000290409 I 0.807
Thhalv10012552m.g Eutrema salsugineum Thhalv10012552m.g I 0.807
28281.m000379 Ricinus communis 28281.m000379 I 0.806
Traes_5BL_92902F993 Triticum aestivum Traes_5BL_92902F993 I 0.798
Cla018421 Citrullus lanatus Cla018421 I 0.798
Eucgr.I02632 Eucalyptus grandis Eucgr.I02632 I 0.798
MDP0000139862 Malus domestica MDP0000139862 I 0.798
TRIUR3_23040 Triticum urartu TRIUR3_23040 I 0.789
mgf010601m Mimulus guttatus mgf010601m I 0.789
mgf015897m Mimulus guttatus mgf015897m I 0.789
mgf024932m Mimulus guttatus mgf024932m I 0.789
Ciclev10004234m.g Citrus clementina Ciclev10004234m.g I 0.789
orange1.1g001759m.g Citrus sinensis orange1.1g001759m.g I 0.789
GSMUA_Achr3G21310_001 Musa acuminata GSMUA_Achr3G21310_001 I 0.781
Solyc01g105230.2 Solanum lycopersicum Solyc01g105230.2 I 0.781
Lus10003405.g Linum usitatissimum Lus10003405.g I 0.781
chr4.LjT13D08.100.nd Lotus japonicus chr4.LjT13D08.100.nd I 0.781
Pavir.Ib01843 Panicum virgatum Pavir.Ib01843 I 0.778
Bra030248 Brassica rapa Bra030248 I 0.772
Bra038534 Brassica rapa Bra038534 I 0.772
GLYMA17G04310 Glycine max GLYMA17G04310 I 0.772
SELMODRAFT_413101 Selaginella moellendorffii SELMODRAFT_413101 I 0.772
SELMODRAFT_441667 Selaginella moellendorffii SELMODRAFT_441667 I 0.772
Aquca_003_00380 Aquilegia coerulea Aquca_003_00380 I 0.772
Thhalv10000026m.g Eutrema salsugineum Thhalv10000026m.g I 0.772
CAMTA3 Vitis vinifera VIT_07s0141g00250 I 0.767
CMTA3 Arabidopsis thaliana AT2G22300 D 0.763
Bo4g149510 Brassica oleracea Bo4g149510 I 0.763
CAMTA3 Arabidopsis lyrata fgenesh2_kg.4__153__AT2G22300.2 I 0.763
MTR_8g090205 Medicago truncatula MTR_8g090205 I 0.763
Bostr.5022s0003 Boechera stricta Bostr.5022s0003 I 0.763
Cagra.2300s0004 Capsella grandiflora Cagra.2300s0004 I 0.763
Carubv10024738m.g Capsella rubella Carubv10024738m.g I 0.763
Ciclev10029792m.g Citrus clementina Ciclev10029792m.g I 0.758
AMTR_s00045p00052450 Amborella trichopoda AMTR_s00045p00052450 I 0.754
ONIVA10G07200 Oryza nivara ONIVA10G07200 I 0.754
gene29100-v1.0-hybrid Fragaria vesca gene29100-v1.0-hybrid I 0.750
GSMUA_Achr3G08460_001 Musa acuminata GSMUA_Achr3G08460_001 I 0.746
MTR_4g094215 Medicago truncatula MTR_4g094215 I 0.746
OPUNC03G06340 Oryza punctata OPUNC03G06340 I 0.737
TCM_021468 Theobroma cacao TCM_021468 I 0.737
Pm008450 Prunus mume Pm008450 I 0.737
29889.m003372 Ricinus communis 29889.m003372 I 0.737
OLONG_019207 Oryza longistaminata OLONG_019207 I 0.736
SapurV1A.0072s0470 Salix purpurea SapurV1A.0072s0470 I 0.728
evm.TU.supercontig_146.41 Carica papaya evm.TU.supercontig_146.41 I 0.720
Gorai.011G204700 Gossypium raimondii Gorai.011G204700 I 0.719
gw1.188.72.1 Physcomitrella patens gw1.188.72.1 I 0.716