Pavir.Aa01242 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Aa01242 T009329_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.824 0.920
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.824 0.920
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.808 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01242.1.p AP2 74 125

Links

Other AP2 family TFs
Other Panicum virgatum TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003797 Calypte anna Aan_R003797 I 0.000
Afo_R002063 Aptenodytes forsteri Afo_R002063 I 0.000
Alligator_sinensis_CCG020422.1 Alligator sinensis Alligator_sinensis_CCG020422.1 I 0.000
Brh_R005039 Buceros rhinoceros Brh_R005039 I 0.000
Cmyd_10010632 Chelonia mydas Cmyd_10010632 I 0.000
TFEB Anolis carolinensis ENSACAG00000002664 I 0.000
ENSAMEG00000013103 Ailuropoda melanoleuca ENSAMEG00000013103 I 0.000
ENSAPLG00000010269 Anas platyrhynchos ENSAPLG00000010269 I 0.000
TFEB Bos taurus ENSBTAG00000012384 I 0.000
TFEB Canis familiaris ENSCAFG00000001599 I 0.000
TFEB Callithrix jacchus ENSCJAG00000004199 I 0.000
TFEB Cavia porcellus ENSCPOG00000008027 I 0.000
ENSCSAG00000011274 Chlorocebus sabaeus ENSCSAG00000011274 I 0.000
tfeb Danio rerio ENSDARG00000010794 I 0.000
TFEB Equus caballus ENSECAG00000019762 I 0.000
ENSFALG00000003097 Ficedula albicollis ENSFALG00000003097 I 0.000
TFEB Felis catus ENSFCAG00000011521 I 0.000
TFEB Homo sapiens ENSG00000112561 D 0.000
ENSGALG00000003404 Gallus gallus ENSGALG00000003404 I 0.000
TFEB Gorilla gorilla ENSGGOG00000002683 I 0.000
ENSLACG00000013218 Latimeria chalumnae ENSLACG00000013218 I 0.000
TFEB Loxodonta africana ENSLAFG00000003059 I 0.000
ENSLOCG00000012145 Lepisosteus oculatus ENSLOCG00000012145 I 0.000
TFEB Meleagris gallopavo ENSMGAG00000006159 I 0.000
TFEB Microcebus murinus ENSMICG00000015674 I 0.000
TFEB Myotis lucifugus ENSMLUG00000000232 I 0.000
TFEB Macaca mulatta ENSMMUG00000004690 I 0.000
TFEB Monodelphis domestica ENSMODG00000012916 I 0.000
ENSMPUG00000013594 Mustela putorius furo ENSMPUG00000013594 I 0.000
Tfeb Mus musculus ENSMUSG00000023990 D 0.000
ENSNLEG00000004906 Nomascus leucogenys ENSNLEG00000004906 I 0.000
TFEB Ornithorhynchus anatinus ENSOANG00000015438 I 0.000
ENSOARG00000002322 Ovis aries ENSOARG00000002322 I 0.000
TFEB Oryctolagus cuniculus ENSOCUG00000027474 I 0.000
TFEB Otolemur garnettii ENSOGAG00000010116 I 0.000
ENSONIG00000019306 Oreochromis niloticus ENSONIG00000019306 I 0.000
tfeb Oryzias latipes ENSORLG00000015866 I 0.000
ENSP00000343948 Macaca fascicularis ENSP00000343948 I 0.000
ENSP00000343948-D1 Bos grunniens ENSP00000343948-D1 I 0.000
ENSPANG00000009713 Papio anubis ENSPANG00000009713 I 0.000
ENSPFOG00000017022 Poecilia formosa ENSPFOG00000017022 I 0.000
ENSPMAG00000001002 Petromyzon marinus ENSPMAG00000001002 I 0.000
ENSPPYG00000016599 Pongo abelii ENSPPYG00000016599 I 0.000
ENSPSIG00000010995 Pelodiscus sinensis ENSPSIG00000010995 I 0.000
TFEB Pan troglodytes ENSPTRG00000018157 I 0.000
TFEB Pteropus vampyrus ENSPVAG00000007581 I 0.000
Tfeb Rattus norvegicus ENSRNOG00000014666 I 0.000
ENSSHAG00000009705 Sarcophilus harrisii ENSSHAG00000009705 I 0.000
TFEB Sus scrofa ENSSSCG00000001621 I 0.000
ENSSTOG00000005880 Ictidomys tridecemlineatus ENSSTOG00000005880 N 0.000
ENSSTOG00000015338 Ictidomys tridecemlineatus ENSSTOG00000015338 I 0.000
ENSTGUG00000017433 Taeniopygia guttata ENSTGUG00000017433 I 0.000
tfeb Tetraodon nigroviridis ENSTNIG00000007281 I 0.000
tfeb Takifugu rubripes ENSTRUG00000000653 I 0.000
ENSTTRG00000016385 Tursiops truncatus ENSTTRG00000016385 I 0.000
ENSXMAG00000003856 Xiphophorus maculatus ENSXMAG00000003856 I 0.000
Gfo_R002984 Geospiza fortis Gfo_R002984 I 0.000
Myotis_brandtii_TFEB_10015405 Myotis brandtii Myotis_brandtii_TFEB_10015405 I 0.000
Ogr06907 Ophisaurus gracilis Ogr06907 I 0.000
Pvit_06044 Pogona vitticeps Pvit_06044 I 0.000
SPU_008175 Strongylocentrotus purpuratus SPU_008175 N 0.000
Tal_R006591 Tyto alba Tal_R006591 I 0.000