Pavir.Ca01410 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ca01410 T009390_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01410.1.p AP2 70 130
Pavir.Ca01410.2.p AP2 70 130

Links

Other AP2 family TFs
Other Panicum virgatum TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30006.m000282 Ricinus communis 30006.m000282 N 0.878
30170.m013669 Ricinus communis 30170.m013669 N 0.758
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N 0.845
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N 0.905
AT2G41710 Arabidopsis thaliana AT2G41710 N 0.938
BGIOSGA019793 Oryza indica BGIOSGA019793 N 0.883
BGIOSGA023402 Oryza indica BGIOSGA023402 N 0.712
Bo3g035770 Brassica oleracea Bo3g035770 N 0.878
Bo4g013420 Brassica oleracea Bo4g013420 N 0.938
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N 0.878
Bra004641 Brassica rapa Bra004641 N 0.938
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N 0.883
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N 0.938
Carubv10023272m.g Capsella rubella Carubv10023272m.g N 0.878
cassava19560.m1 Manihot esculenta cassava19560.m1 N 0.797
cassava40681.m1 Manihot esculenta cassava40681.m1 N 0.679
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N 0.878
Ca_07237 Cicer arietinum Ca_07237 N 0.938
chr3.CM0452.130.nd Lotus japonicus chr3.CM0452.130.nd N 0.737
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N 0.938
Cla022214 Citrullus lanatus Cla022214 N 0.710
Cucsa.338170 Cucumis sativus Cucsa.338170 N 0.923
Cucsa.353040 Cucumis sativus Cucsa.353040 I 0.762
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N 0.938
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N 0.689
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N 0.938
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N 0.713
F775_10869 Aegilops tauschii F775_10869 N 0.883
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N 0.938
gene02470-v1.0-hybrid Fragaria vesca gene02470-v1.0-hybrid N 0.878
GLYMA02G33090 Glycine max GLYMA02G33090 N 0.931
GLYMA03G29240 Glycine max GLYMA03G29240 N 0.938
GLYMA19G31960 Glycine max GLYMA19G31960 N 0.938
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N 0.938
GRMZM2G013657 Zea mays GRMZM2G013657 N 0.943
GRMZM2G146688 Zea mays GRMZM2G146688 N 0.759
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N 0.824
LPERR05G11930 Leersia perrieri LPERR05G11930 N 0.883
Lus10000965.g Linum usitatissimum Lus10000965.g N 0.878
Lus10011730.g Linum usitatissimum Lus10011730.g N 0.696
Lus10039650.g Linum usitatissimum Lus10039650.g N 0.696
Lus10040140.g Linum usitatissimum Lus10040140.g N 0.878
MDP0000314518 Malus domestica MDP0000314518 N 0.878
MDP0000803527 Malus domestica MDP0000803527 N 0.735
mgf017600m Mimulus guttatus mgf017600m N 0.838
mgf019897m Mimulus guttatus mgf019897m N 0.864
MLOC_7325 Hordeum vulgare MLOC_7325 N 0.943
MTR_7g091390 Medicago truncatula MTR_7g091390 N 0.878
OB03G42600 Oryza brachyantha OB03G42600 N 0.693
OB05G22940 Oryza brachyantha OB05G22940 N 0.883
OB06G31060 Oryza brachyantha OB06G31060 N 0.712
OBART05G15060 Oryza barthii OBART05G15060 N 0.883
OBART06G23380 Oryza barthii OBART06G23380 N 0.712
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N 0.883
OGLUM06G03000 Oryza glumaepatula OGLUM06G03000 N 0.820
OLONG_002212 Oryza longistaminata OLONG_002212 N 0.712
OLONG_020459 Oryza longistaminata OLONG_020459 N 0.883
OMERI05G13370 Oryza meridionalis OMERI05G13370 N 0.883
OMERI06G23370 Oryza meridionalis OMERI06G23370 N 0.712
ONIVA05G15390 Oryza nivara ONIVA05G15390 N 0.883
OPUNC05G13110 Oryza punctata OPUNC05G13110 N 0.883
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N 0.938
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N 0.943
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N 0.883
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N 0.943
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N 0.772
PK12273.1 Cannabis sativa PK12273.1 N 0.938
PK15670.1 Cannabis sativa PK15670.1 N 0.773
PK18855.1 Cannabis sativa PK18855.1 N 0.894
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N 0.878
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N 0.878
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N 0.878
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N 0.848
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N 0.938
Sb09g019190 Sorghum bicolor Sb09g019190 N 0.883
Si021952m.g Setaria italica Si021952m.g N 0.943
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N 0.805
TCM_024554 Theobroma cacao TCM_024554 N 0.938
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N 0.938
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N 0.822
TRIUR3_07433 Triticum urartu TRIUR3_07433 N 0.883
BBM Vitis vinifera VIT_04s0023g00950 N 0.713
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N 0.878