Thhalv10015907m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10015907m.g T009947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.807 1.000
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.724 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.724 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.724 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.704 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.695 0.796
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.682 0.776
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.680 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015907m AP2 32 83

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001472 Calypte anna Aan_R001472 N
Afo_R013021 Aptenodytes forsteri Afo_R013021 N
Alligator_sinensis_CCG015430.1 Alligator sinensis Alligator_sinensis_CCG015430.1 N
Brh_R004016 Buceros rhinoceros Brh_R004016 N
Cmyd_10020922 Chelonia mydas Cmyd_10020922 N
PRDM2 Anolis carolinensis ENSACAG00000010749 N
ENSAMEG00000006714 Ailuropoda melanoleuca ENSAMEG00000006714 N
ENSAPLG00000014764 Anas platyrhynchos ENSAPLG00000014764 N
PRDM2 Bos taurus ENSBTAG00000020552 N
PRDM2 Equus caballus ENSECAG00000008911 N
PRDM2 Erinaceus europaeus ENSEEUG00000014607 N
ENSFALG00000009941 Ficedula albicollis ENSFALG00000009941 N
ENSGALG00000004089 Gallus gallus ENSGALG00000004089 N
ENSLACG00000004511 Latimeria chalumnae ENSLACG00000004511 N
PRDM2 Meleagris gallopavo ENSMGAG00000005888 N
PRDM2 Myotis lucifugus ENSMLUG00000006969 N
ENSMPUG00000016352 Mustela putorius furo ENSMPUG00000016352 N
PRDM2 Ornithorhynchus anatinus ENSOANG00000009908 N
ENSP00000235372-D1 Bos grunniens ENSP00000235372-D1 N
ENSPSIG00000005394 Pelodiscus sinensis ENSPSIG00000005394 N
PRDM2 Tursiops truncatus ENSTTRG00000005029 N
Gfo_R002647 Geospiza fortis Gfo_R002647 N
Myotis_brandtii_PRDM2_10022047 Myotis brandtii Myotis_brandtii_PRDM2_10022047 N
Ogr07692 Ophisaurus gracilis Ogr07692 N
prdm2 Xenopus tropicalis XB-GENE-5957530 N