LjSGA_016572.1 (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjSGA_016572.1 T010275_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.747 0.878
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.715 0.673
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.715 0.673
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.715 0.673
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_016572.1 AP2 107 158

Links

Other AP2 family TFs
Other Lotus japonicus TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB114 Arabidopsis thaliana AT1G66380 I
Cagra.0463s0005 Capsella grandiflora Cagra.0463s0005 N
Eucgr.F02843 Eucalyptus grandis Eucgr.F02843 N
Eucgr.F02845 Eucalyptus grandis Eucgr.F02845 N
Eucgr.J01558 Eucalyptus grandis Eucgr.J01558 N
gene26513-v1.0-hybrid Fragaria vesca gene26513-v1.0-hybrid N
Lus10006541.g Linum usitatissimum Lus10006541.g N
MDP0000127691 Malus domestica MDP0000127691 N
MDP0000317257 Malus domestica MDP0000317257 N
mgf022083m Mimulus guttatus mgf022083m N
PGSC0003DMG400013965 Solanum tuberosum PGSC0003DMG400013965 N
Pm029437 Prunus mume Pm029437 N
Pm029444 Prunus mume Pm029444 N
VIT_02s0033g00370 Vitis vinifera VIT_02s0033g00370 N