Ogr11002 (Ophisaurus gracilis)
AP-2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03299 (TF_AP-2) IPR013854 Ogr11002 T011195_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tfap2a
M00111_2.00 		Mus musculus
HSCCBNVRGS
SCYBNVGGSD		 PBM
Badis et al.(2009)
Tcfap2a_2337 		0.713 0.713
Tfap2a
M02768_2.00 		Mus musculus
HGCCYBVRGGCR
YGCCYBVRGGCD		 SELEX
Jolma et al.(2013)
Tcfap2a_1 		0.713 0.713
Tfap2a
M02769_2.00 		Mus musculus
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
Tcfap2a_2 		0.713 0.713
Tfap2a
M02770_2.00 		Mus musculus
WGCCCYBVGGGCD
HGCCCBVRGGGCW		 SELEX
Jolma et al.(2013)
Tcfap2a_3 		0.713 0.713
Tfap2a
M08704_2.00 		Mus musculus
SCCYCRGGSNNN
NNNSCCYGRGGS		 Misc
Kulakovskiy et al.(2013)
AP2A_MOUSE.H11MO.0.A 		0.713 0.713
TFAP2A
M02762_2.00 		Homo sapiens
HGCCYBVRGGSD
HSCCYBVRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_1 		0.706 0.706
TFAP2A
M02763_2.00 		Homo sapiens
HGCCYSMGGCN
NGCCKSRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_2 		0.706 0.706
TFAP2A
M02764_2.00 		Homo sapiens
NSCCCBNVRGGSN
NSCCYBNVGGGSN		 SELEX
Jolma et al.(2013)
TFAP2A_3 		0.706 0.706
TFAP2A
M02765_2.00 		Homo sapiens
HGCCTSRGGCD
HGCCYSAGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_4 		0.706 0.706
TFAP2A
M02766_2.00 		Homo sapiens
HGCCYBVRGGCD
HGCCYBVRGGCD		 SELEX
Jolma et al.(2013)
TFAP2A_5 		0.706 0.706
TFAP2A
M02767_2.00 		Homo sapiens
WGCCCYNVGGGCD
HGCCCBNRGGGCW		 SELEX
Jolma et al.(2013)
TFAP2A_6 		0.706 0.706
TFAP2A
M04054_2.00 		Homo sapiens
NGCCBSVGGCN
NGCCBSVGGCN		 SELEX
Yin et al.(2017)
TFAP2A_FL_HT-SELEX 		0.706 0.706
TFAP2A
M07784_2.00 		Homo sapiens
NBNSCCYSRGGSCWN
NWGSCCYSRGGSNVN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_AP2ALPHA_UCD 		0.706 0.706
TFAP2A
M08703_2.00 		Homo sapiens
NHDSCCYCAGGSHWN
NWDSCCTGRGGSHDN		 Misc
Kulakovskiy et al.(2013)
AP2A_HUMAN.H11MO.0.A 		0.706 0.706
TFAP2A
M09755_2.00 		Homo sapiens
GCCBBVVGS
SCBBVVGGC		 Transfac
Matys et al.(2006)
V$AP2ALPHA_01 		0.706 0.706
TFAP2A
M09756_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_02 		0.706 0.706
TFAP2A
M09757_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_03 		0.706 0.706
TFAP2A
M09758_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_Q4 		0.706 0.706
TFAP2A
M09759_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AP2ALPHA_Q6 		0.706 0.706
TFAP2A
M09760_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFAP2A_09 		0.706 0.706
TFAP2A
M04055_2.00 		Homo sapiens
NSCCTNAGGSN
NSCCTNAGGSN		 SELEX
Yin et al.(2017)
TFAP2A_FL_Methyl-HT-SELEX 		0.706 0.706
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr11002 AP-2 212 347
Ogr11002 AP-2 345 374

Links

Other AP-2 family TFs
Other Ophisaurus gracilis TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29801.m003163 Ricinus communis 29801.m003163 N 0.000
30170.m013700 Ricinus communis 30170.m013700 N 0.000
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N 0.000
Bo5g076460 Brassica oleracea Bo5g076460 N 0.000
Bo6g018390 Brassica oleracea Bo6g018390 N 0.000
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N 0.000
Bra018796 Brassica rapa Bra018796 N 0.000
Bra040671 Brassica rapa Bra040671 N 0.000
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N 0.000
Carubv10011964m.g Capsella rubella Carubv10011964m.g N 0.000
cassava46929.m1 Manihot esculenta cassava46929.m1 N 0.000
cassava47360.m1 Manihot esculenta cassava47360.m1 N 0.000
Ca_06466 Cicer arietinum Ca_06466 N 0.000
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N 0.000
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N 0.000
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N 0.000
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N 0.000
gene24577-v1.0-hybrid Fragaria vesca gene24577-v1.0-hybrid N 0.000
GLYMA02G11500 Glycine max GLYMA02G11500 N 0.000
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N 0.000
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N 0.000
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N 0.000
MDP0000484847 Malus domestica MDP0000484847 N 0.000
MDP0000713910 Malus domestica MDP0000713910 N 0.000
mgf020647m Mimulus guttatus mgf020647m N 0.000
MTR_4g085700 Medicago truncatula MTR_4g085700 N 0.000
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N 0.000
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N 0.000
Pavir.J18412 Panicum virgatum Pavir.J18412 N 0.000
Pm005302 Prunus mume Pm005302 N 0.000
Pm021290 Prunus mume Pm021290 N 0.000
RGE1 Populus trichocarpa POPTR_0001s31250 N 0.000
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N 0.000
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N 0.000
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N 0.000
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N 0.000
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N 0.000
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N 0.000
SELMODRAFT_424152 Selaginella moellendorffii SELMODRAFT_424152 N 0.000
SELMODRAFT_446556 Selaginella moellendorffii SELMODRAFT_446556 N 0.000
Si009419m.g Setaria italica Si009419m.g N 0.000
TCM_007083 Theobroma cacao TCM_007083 N 0.000
TCM_033803 Theobroma cacao TCM_033803 N 0.000
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N 0.000
RGE1 Vitis vinifera VIT_03s0063g00170 N 0.000
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N 0.000