CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_Genewise1.C_60341
(
Heterobasidion annosum
)
APSES
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04383 (KilA-N)
IPR018004
estExt_Genewise1.C_60341
T013975_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NCU07587
M01654_2.00
Neurospora crassa
NNNDCRCGN
NCGYGHNNN
PBM
Weirauch et al.(2014)
pTH9687
0.734
0.680
estExt_fgenesh2_pg.C_10694_CONSTRUCT
M01102_2.00
PBM CONSTRUCTS
NNACGCGW
WCGCGTNN
PBM
Lambert et al.(2019)
pTH9838
0.708
0.640
MBP1
M00003_2.00
Saccharomyces cerevisiae
VACGCGWD
HWCGCGTB
PBM
Badis et al.(2008)
MBP1_4486
0.697
0.467
MBP1
M01514_2.00
Saccharomyces cerevisiae
NNNNDCRCGH
DCGYGHNNNN
PBM
Zhu et al.(2009)
Mbp1
0.697
0.467
MBP1
M07434_2.00
Saccharomyces cerevisiae
NDCGCGH
DCGCGHN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0329.1
0.697
0.467
MBP1
M08472_2.00
Saccharomyces cerevisiae
NDCGCGH
DCGCGHN
Misc
DeBoer et al.(2011)
YDL056W_500
0.697
0.467
NCU07246
M01653_2.00
Neurospora crassa
NDCRCGN
NCGYGHN
PBM
Weirauch et al.(2014)
pTH8957
0.664
0.467
ANIA_03154
M01650_2.00
Aspergillus nidulans
NNACGCG
CGCGTNN
PBM
Weirauch et al.(2014)
pTH8232
0.659
0.400
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_60341
APSES
3
79
RGIAVMRRRADSYVNATQILKVAGVDKGRRTKILEKEILPGKHEIVQGGYGKYQGTWIPLDRGRDIAVQYGVAHLLA
Links
Other
APSES
family TFs
Other
Heterobasidion annosum
TFs
412 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30178.m000864
Ricinus communis
30178.m000864
N
AT3G07500
Arabidopsis thaliana
AT3G07500
N
Bo5g141470
Brassica oleracea
Bo5g141470
N
Bostr.22252s0282
Boechera stricta
Bostr.22252s0282
N
Cagra.0133s0093
Capsella grandiflora
Cagra.0133s0093
N
Carubv10014621m.g
Capsella rubella
Carubv10014621m.g
N
Ciclev10016654m.g
Citrus clementina
Ciclev10016654m.g
N
Cla015099
Citrullus lanatus
Cla015099
N
Cucsa.388100
Cucumis sativus
Cucsa.388100
N
Eucgr.K02085
Eucalyptus grandis
Eucgr.K02085
N
evm.TU.supercontig_8.53
Carica papaya
evm.TU.supercontig_8.53
N
gene17500-v1.0-hybrid
Fragaria vesca
gene17500-v1.0-hybrid
N
Gorai.N002600
Gossypium raimondii
Gorai.N002600
N
MDP0000123745
Malus domestica
MDP0000123745
N
MDP0000156730
Malus domestica
MDP0000156730
N
MDP0000243502
Malus domestica
MDP0000243502
N
mgf009623m
Mimulus guttatus
mgf009623m
N
orange1.1g028717m.g
Citrus sinensis
orange1.1g028717m.g
N
POPTR_0014s17500
Populus trichocarpa
POPTR_0014s17500
N
PRUPE_ppa011264mg
Prunus persica
PRUPE_ppa011264mg
N
SapurV1A.0137s0280
Salix purpurea
SapurV1A.0137s0280
N
scaffold_300886.1
Arabidopsis lyrata
scaffold_300886.1
N
TCM_002647
Theobroma cacao
TCM_002647
N
VIT_00s0269g00010
Vitis vinifera
VIT_00s0269g00010
N